Aniseed - Gene card

Gene 'KH2012:KH.C3.642'

Gene Card

Best human hits

CTBS

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005838

Gene Model ID

KH2012:KH.C3.642

Location

KhC3:1937445..1939233

Transcript Models and Sequences

KH2012:KH.C3.642.v1.A.SL1-1
KH2012:KH.C3.642.v1.A.SL2-1
KH2012:KH.C3.642.v1.A.SL3-1
KH2012:KH.C3.642.v1.A.SL4-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000021800
NCBI Reference Sequence	XM_002127035.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb2b14

Plate: R1CiGC28p09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Glyco_hydro_18_chit_AS	ProSitePatterns	Glycoside hydrolase, chitinase active site
Chitinase_insertion_sf	Gene3D	Chitinase insertion domain superfamily
Glycoside_hydrolase_SF	SUPERFAMILY	Glycoside hydrolase superfamily
Glyco_hydro18_cat	Pfam	Glycoside hydrolase family 18, catalytic domain
Chitinase_II	SMART	Chitinase II

GOSlim

7 results

GO Term	Annotation Origin	Type
extracellular space	Orthology	cellular component
lysosome	Orthology	cellular component
metabolic process	Orthology	biological process
hydrolase activity	Orthology	molecular function
extracellular exosome	Orthology	cellular component
organic substance metabolic process	Orthology	biological process
carbohydrate derivative binding	Orthology	molecular function

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
hydrolase activity, hydrolyzing O-glycosyl compounds	Hs	molecular function
chitinase activity	Hs	molecular function
extracellular space	Hs	cellular component
lysosome	Hs	cellular component
carbohydrate metabolic process	Hs	biological process
chitin catabolic process	Hs	biological process
chitin binding	Hs	molecular function
metabolic process	Hs	biological process
oligosaccharide catabolic process	Hs	biological process
hydrolase activity	Hs	molecular function
hydrolase activity, acting on glycosyl bonds	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
hydrolase activity, hydrolyzing O-glycosyl compounds	Hs	molecular function	204	1.62e-62
chitinase activity	Hs	molecular function	204	1.62e-62
extracellular space	Hs	cellular component	204	1.62e-62
lysosome	Hs	cellular component	204	1.62e-62
chitin binding	Hs	molecular function	204	1.62e-62
hydrolase activity	Hs	molecular function	204	1.62e-62
hydrolase activity, acting on glycosyl bonds	Hs	molecular function	204	1.62e-62
extracellular exosome	Hs	cellular component	204	1.62e-62

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
hydrolase activity, hydrolyzing O-glycosyl compounds	ProSitePatterns	molecular function
carbohydrate metabolic process	Pfam	biological process	2.3E-22
chitin binding	SMART	molecular function	1.4E-4