Aniseed - Gene card

Gene 'KH2012:KH.C3.455'

Gene Card

Best human hits

SNX13; SNX14; SNX25

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005637

Gene Model ID

KH2012:KH.C3.455

Location

KhC3:5531538..5541058

Transcript Models and Sequences

KH2012:KH.C3.455.v1.C.ND1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg029g21

Plate: R1CiGC20g04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
Phox_assoc	Pfam	Phox-associated domain
RGS	SMART	RGS domain
PX_dom_sf	Gene3D	PX domain superfamily
Phox	ProSiteProfiles	Phox homologous domain
Phox	Pfam	Phox homologous domain
PX_dom_sf	SUPERFAMILY	PX domain superfamily
Phox	SMART	Phox homologous domain
Sorting_nexin_C	Pfam	Sorting nexin, C-terminal
RGS	ProSiteProfiles	RGS domain
RGS_sf	SUPERFAMILY	RGS domain superfamily
Phox_assoc	ProSiteProfiles	Phox-associated domain
RGS	Pfam	RGS domain
SNX13_RGS	CDD	SNX13, RGS domain
SNX13_PX	CDD	Sorting nexin-13, PX domain

GOSlim

18 results

GO Term	Annotation Origin	Type
lysosome	Blast	cellular component
lysosomal membrane	Blast	cellular component
endosome	Orthology	cellular component
early endosome	Orthology	cellular component
intracellular protein transport	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cell projection	Blast	cellular component
intracellular membrane-bounded organelle	Blast	cellular component
positive regulation of GTPase activity	Orthology	biological process
binding	Orthology	molecular function
whole membrane	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
anion binding	Orthology	molecular function
receptor binding	Blast	molecular function

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
endosome	Hs	cellular component
early endosome	Hs	cellular component
intracellular protein transport	Hs	biological process
lipid binding	Hs	molecular function
negative regulation of signal transduction	Hs	biological process
protein transport	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
early endosome membrane	Hs	cellular component
phosphatidylinositol-3-phosphate binding	Hs	molecular function
phosphatidylinositol binding	Hs	molecular function
positive regulation of GTPase activity	Hs	biological process

GO (Blast)