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GENE CARD

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  1. Gene 'KH2012:KH.C3.425'

Gene Card

Best human hits

CEP164

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005604

Gene Model ID

KH2012:KH.C3.425

Location

KhC3:2732282..2742767

Transcript Models and Sequences

  KH2012:KH.C3.425.v1.C.SL1-1
KH2012:KH.C3.425.v2.C.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence XM_002121581.3
NCBI Reference Sequence XM_018811135.1
Collections

Gateway full ORF

5 results

cien125173

Plate: VES89_I20

cien127226

Plate: VES90_M04

cien199781

Plate: VES101_I08

cien225583

Plate: VES105_B05

cien227846

Plate: VES105_L10

Gene collection 1 (N. Satoh)

3 results

ciad038o02

Plate: R1CiGC04e08

cicl017l03

Plate: R1CiGC10h09

cigd044h19

Plate: R1CiGC41l21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

16 results

IPR Term Analysis Definition
Methylthiotransferase_N_sf Gene3D Methylthiotransferase, N-terminal domain superfamily
Methylthiotransferase_CS ProSitePatterns Methylthiotransferase, conserved site
Methylthiotransferase TIGRFAM Methylthiotransferase
rSAM SFLD Radical SAM
rSAM Pfam Radical SAM
Elp3/MiaB/NifB SMART Elp3/MiaB/NifB
Methylthiotransferase_N ProSiteProfiles Methylthiotransferase, N-terminal
Methylthiotransferase_N Pfam Methylthiotransferase, N-terminal
TRAM_dom ProSiteProfiles TRAM domain
MiaB-like_B TIGRFAM MiaB-like tRNA modifying enzyme, archaeal-type
rSAM_horseshoe Gene3D Radical SAM, alpha/beta horseshoe
WW_dom Pfam WW domain
WW_dom_sf SUPERFAMILY WW domain superfamily
WW_dom SMART WW domain
WW_dom CDD WW domain
WW_dom ProSiteProfiles WW domain

GOSlim

25 results

GO Term Annotation Origin Type
G2/M transition of mitotic cell cycle Orthology biological process
protein binding Orthology molecular function
extracellular space Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
DNA repair Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
cell cycle Orthology biological process
cell projection organization Orthology biological process
intracellular membrane-bounded organelle Orthology cellular component
cell division Orthology biological process
catalytic activity InterProScan molecular function
transferase activity InterProScan molecular function
cytoplasmic part Orthology cellular component
microtubule organizing center Orthology cellular component
organelle part Orthology cellular component
cell projection part Orthology cellular component
plasma membrane region Orthology cellular component
macromolecular complex Orthology cellular component
RNA processing InterProScan biological process
cofactor binding InterProScan molecular function

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
G2/M transition of mitotic cell cycle Hs biological process
protein binding Hs molecular function
extracellular space Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
centrosome Hs cellular component
centriole Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
DNA repair Hs biological process
cellular response to DNA damage stimulus Hs biological process
cell cycle Hs biological process
regulation of G2/M transition of mitotic cell cycle Hs biological process
cell projection organization Hs biological process
intracellular membrane-bounded organelle Hs cellular component
cell division Hs biological process
cilium assembly Hs biological process
ciliary transition fiber Hs cellular component

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 161 7.72e-41
extracellular space Hs cellular component 161 7.72e-41
nucleus Hs cellular component 161 7.72e-41
nucleoplasm Hs cellular component 161 7.72e-41
cytoplasm Hs cellular component 161 7.72e-41
centrosome Hs cellular component 161 7.72e-41
centriole Hs cellular component 161 7.72e-41
cytosol Hs cellular component 161 7.72e-41
cytoskeleton Hs cellular component 161 7.72e-41
intracellular membrane-bounded organelle Hs cellular component 161 7.72e-41
ciliary transition fiber Hs cellular component 161 7.72e-41

GO (InterProScan)

6 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.78E-9
catalytic activity SMART molecular function 7.8E-38
tRNA modification TIGRFAM biological process 4.6E-100
transferase activity TIGRFAM molecular function 4.6E-100
iron-sulfur cluster binding SMART molecular function 7.8E-38
4 iron, 4 sulfur cluster binding TIGRFAM molecular function 4.6E-100

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