Aniseed - Gene card

Gene 'KH2012:KH.C3.405'

Gene Card

Best human hits

SETD3; SETD4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005583

Gene Model ID

KH2012:KH.C3.405

Location

KhC3:4488371..4494601

Transcript Models and Sequences

KH2012:KH.C3.405.v1.C.SL1-1
KH2012:KH.C3.405.v1.C.SL2-1
KH2012:KH.C3.405.v2.C.SL1-2
KH2012:KH.C3.405.v2.C.SL2-2

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000004735

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb9n6

Plate: R1CiGC30c09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
SET_dom	Pfam	SET domain
Rubisco_LSMT_subst-bd_sf	SUPERFAMILY	Rubisco LSMT, substrate-binding domain superfamily
Rubisco_LSMT_subst-bd_sf	Gene3D	Rubisco LSMT, substrate-binding domain superfamily
Rubisco_LSMT_subst-bd	Pfam	Rubisco LSMT, substrate-binding domain
Hist-Lys_N-MeTrfase_SETD3	ProSiteProfiles	Histone-lysine N-methyltransferase, SETD3

GOSlim

17 results

GO Term	Annotation Origin	Type
transcription coactivator activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transferase activity	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
regulation of nucleic acid-templated transcription	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
transcription factor binding	Orthology	molecular function
organelle organization	Orthology	biological process
metabolic process	Orthology	biological process
cellular protein modification process	Orthology	biological process

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear chromatin	Hs	cellular component
RNA polymerase II activating transcription factor binding	Hs	molecular function
transcription coactivator activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
methyltransferase activity	Hs	molecular function
histone H3-K36 methylation	Hs	biological process
transferase activity	Hs	molecular function
peptidyl-lysine methylation	Hs	biological process
peptidyl-lysine trimethylation	Hs	biological process
histone-lysine N-methyltransferase activity	Hs	molecular function
peptidyl-lysine monomethylation	Hs	biological process
peptidyl-lysine dimethylation	Hs	biological process
methylation	Hs	biological process
histone methyltransferase activity (H3-K4 specific)	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
histone methyltransferase activity (H3-K36 specific)	Hs	molecular function
histone H3-K4 methylation	Hs	biological process
regulation of nucleic acid-templated transcription	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	338	5.27e-109
RNA polymerase II activating transcription factor binding	Hs	molecular function	338	5.27e-109
transcription coactivator activity	Hs	molecular function	338	5.27e-109
protein binding	Hs	molecular function	338	5.27e-109
nucleus	Hs	cellular component	338	5.27e-109
nucleoplasm	Hs	cellular component	338	5.27e-109
nucleolus	Hs	cellular component	62.0	3.95e-10
methyltransferase activity	Hs	molecular function	338	5.27e-109
protein-lysine N-methyltransferase activity	Hs	molecular function	62.0	3.95e-10
transferase activity	Hs	molecular function	338	5.27e-109
histone-lysine N-methyltransferase activity	Hs	molecular function	338	5.27e-109
histone methyltransferase activity (H3-K4 specific)	Hs	molecular function	338	5.27e-109
histone methyltransferase activity (H3-K36 specific)	Hs	molecular function	338	5.27e-109

GO (InterProScan)