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GENE CARD

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  1. Gene 'KH2012:KH.C3.27'

Gene Card

Best human hits

TFCP2; TFCP2L1; UBP1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005436

Gene Model ID

KH2012:KH.C3.27

Location

KhC3:4798583..4801808

Transcript Models and Sequences

  KH2012:KH.C3.27.v1.A.SL1-1
KH2012:KH.C3.27.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009038
NCBI Reference Sequence XM_004225800.3
Collections

Gateway full ORF

2 results

cien122023

Plate: VES89_C09

cien205997

Plate: VES102_L07

Gene collection 1 (N. Satoh)

1 result

cieg014a12

Plate: R1CiGC17o20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
SAM/pointed_sf SUPERFAMILY Sterile alpha motif/pointed domain superfamily
CP2 Pfam CP2 transcription factor

GOSlim

30 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
cell morphogenesis Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
core promoter proximal region sequence-specific DNA binding Orthology molecular function
angiogenesis Orthology biological process
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
membrane Orthology cellular component
macromolecular complex Orthology cellular component
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
nucleolus Orthology cellular component
cell development Orthology biological process
animal organ development Orthology biological process
multicellular organism development Orthology biological process
mRNA metabolic process Orthology biological process

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
cell morphogenesis Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
core promoter proximal region sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
angiogenesis Hs biological process
fibrillar center Hs cellular component
epithelial cell maturation Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
steroid biosynthetic process Hs biological process
salivary gland development Hs biological process
transcription factor binding Hs molecular function
determination of adult lifespan Hs biological process
membrane Hs cellular component
viral genome replication Hs biological process
macromolecular complex Hs cellular component
mRNA transcription from RNA polymerase II promoter Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of growth Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 434 9.82e-148
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 476 1.99e-163
core promoter proximal region sequence-specific DNA binding Hs molecular function 459 2.11e-157
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 459 2.11e-157
fibrillar center Hs cellular component 434 9.82e-148
DNA binding Hs molecular function 476 1.99e-163
transcription factor activity, sequence-specific DNA binding Hs molecular function 476 1.99e-163
transcription corepressor activity Hs molecular function 476 1.99e-163
protein binding Hs molecular function 459 2.11e-157
nucleus Hs cellular component 476 1.99e-163
nucleoplasm Hs cellular component 476 1.99e-163
cytoplasm Hs cellular component 434 9.82e-148
mitochondrion Hs cellular component 434 9.82e-148
cytosol Hs cellular component 476 1.99e-163
transcription factor binding Hs molecular function 459 2.11e-157
membrane Hs cellular component 434 9.82e-148
macromolecular complex Hs cellular component 459 2.11e-157
sequence-specific DNA binding Hs molecular function 476 1.99e-163

GO (InterProScan)

No result

GO Term Analysis Type e-value

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