Aniseed - Gene card

Gene 'KH2012:KH.C3.246'

Gene Card

Best human hits

MIEN1; SELENOT

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005410

Gene Model ID

KH2012:KH.C3.246

Location

KhC3:2523332..2524543

Transcript Models and Sequences

KH2012:KH.C3.246.v1.A.SL1-1
KH2012:KH.C3.246.v1.A.SL2-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_004225781.3

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cign011o13

Plate: R1CiGC41n08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Selenoprotein_Rdx-typ	TIGRFAM	Selenoprotein, Rdx-type
Thioredoxin-like_sf	SUPERFAMILY	Thioredoxin-like superfamily
Selenoprotein_Rdx-typ	Pfam	Selenoprotein, Rdx-type
Selenoprotein_T	PANTHER	Selenoprotein T

GOSlim

18 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
cytoplasm	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cytosol	Blast	cellular component
plasma membrane	Blast	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
oxidation-reduction process	Orthology	biological process
extracellular exosome	Blast	cellular component
regulation of gene expression	Orthology	biological process
catalytic activity	Orthology	molecular function
cellular process	Orthology	biological process
cell	Orthology	cellular component
binding	Orthology	molecular function
response to organic substance	Orthology	biological process
animal organ development	Orthology	biological process
intrinsic component of plasma membrane	Blast	cellular component

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
selenocysteine incorporation	Hs	biological process
thioredoxin-disulfide reductase activity	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
positive regulation of cytosolic calcium ion concentration	Hs	biological process
selenium binding	Hs	molecular function
response to glucose	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
oxidoreductase activity	Hs	molecular function
pancreas development	Hs	biological process
glucose homeostasis	Hs	biological process
cell redox homeostasis	Hs	biological process
oxidation-reduction process	Hs	biological process
cellular oxidant detoxification	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
thioredoxin-disulfide reductase activity	Hs	molecular function	117	2.18e-34
protein binding	Hs	molecular function	33.9	0.006
cytoplasm	Hs	cellular component	33.9	0.006
endoplasmic reticulum	Hs	cellular component	117	2.18e-34
endoplasmic reticulum membrane	Hs	cellular component	117	2.18e-34
cytosol	Hs	cellular component	33.9	0.006
plasma membrane	Hs	cellular component	33.9	0.006
selenium binding	Hs	molecular function	117	2.18e-34
membrane	Hs	cellular component	117	2.18e-34
integral component of membrane	Hs	cellular component	117	2.18e-34
oxidoreductase activity	Hs	molecular function	117	2.18e-34
intrinsic component of the cytoplasmic side of the plasma membrane	Hs	cellular component	33.9	0.006
extracellular exosome	Hs	cellular component	33.9	0.006

GO (InterProScan)