Aniseed - Gene card

Gene 'KH2012:KH.C3.147'

Gene Card

Best human hits

NT5C3A; NT5C3B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005303

Gene Model ID

KH2012:KH.C3.147

Location

KhC3:2086782..2087951

Transcript Models and Sequences

KH2012:KH.C3.147.v1.A.SL1-1
KH2012:KH.C3.147.v1.A.SL2-1
KH2012:KH.C3.147.v1.A.SL3-1
KH2012:KH.C3.147.v1.A.SL4-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000009520

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl017h21

Plate: R1CiGC10f11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
HAD_sf	Gene3D	HAD superfamily
HAD-like_sf	SUPERFAMILY	HAD-like superfamily
Pyrimidine_nucleotidase_eu	SFLD	Pyrimidine 5'-nucleotidase, eukaryotic
Pyrimidine_nucleotidase_eu	Pfam	Pyrimidine 5'-nucleotidase, eukaryotic
Pyrimidine_nucleotidase_eu	TIGRFAM	Pyrimidine 5'-nucleotidase, eukaryotic

GOSlim

17 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
magnesium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
dephosphorylation	Orthology	biological process
transferase activity	Orthology	molecular function
hydrolase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
phosphotransferase activity, alcohol group as acceptor	Orthology	molecular function
phosphate-containing compound metabolic process	Orthology	biological process
nucleobase-containing compound metabolic process	Orthology	biological process
nuclear-transcribed mRNA catabolic process	Orthology	biological process
immune system process	Orthology	biological process
defense response	Orthology	biological process

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
tRNA 2'-phosphotransferase activity	Hs	molecular function
magnesium ion binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
5'-nucleotidase activity	Hs	molecular function
nucleotide metabolic process	Hs	biological process
dephosphorylation	Hs	biological process
transferase activity	Hs	molecular function
hydrolase activity	Hs	molecular function
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	Hs	biological process
metal ion binding	Hs	molecular function
defense response to virus	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	296	8.59e-100
tRNA 2'-phosphotransferase activity	Hs	molecular function	296	8.59e-100
magnesium ion binding	Hs	molecular function	296	8.59e-100
protein binding	Hs	molecular function	281	9.04e-95
cytoplasm	Hs	cellular component	296	8.59e-100
mitochondrion	Hs	cellular component	296	8.59e-100
endoplasmic reticulum	Hs	cellular component	296	8.59e-100
cytosol	Hs	cellular component	296	8.59e-100
5'-nucleotidase activity	Hs	molecular function	296	8.59e-100
transferase activity	Hs	molecular function	296	8.59e-100
hydrolase activity	Hs	molecular function	296	8.59e-100
metal ion binding	Hs	molecular function	296	8.59e-100

GO (InterProScan)

3 results

GO Term	Analysis	Type
magnesium ion binding	SFLD	molecular function
cytoplasm	SFLD	cellular component
5'-nucleotidase activity	SFLD	molecular function