Aniseed - Gene card

Gene 'KH2012:KH.C2.16'

Gene Card

Best human hits

DDX27; DDX47; DDX54

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004332

Gene Model ID

KH2012:KH.C2.16

Location

KhC2:349061..355070

Transcript Models and Sequences

KH2012:KH.C2.16.v1.A.ND1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002125952.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv009k03

Plate: R1CiGC25b14

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Helicase_C	ProSiteProfiles	Helicase, C-terminal
RNA-helicase_DEAD-box_CS	ProSitePatterns	ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_C	SMART	Helicase, C-terminal
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	CDD	Helicase, C-terminal
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	Pfam	Helicase, C-terminal
RNA_helicase_DEAD_Q_motif	ProSiteProfiles	RNA helicase, DEAD-box type, Q motif

GOSlim

19 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
transcription corepressor activity	Blast	molecular function
RNA binding	Orthology	molecular function
receptor binding	Blast	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
Golgi apparatus	Blast	cellular component
RNA processing	Orthology	biological process
membrane	Blast	cellular component
RNA metabolic process	Orthology	biological process
hydrolase activity	Orthology	molecular function
nucleoside-triphosphatase activity	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
transcription factor binding	Blast	molecular function

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
chromosome	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
rRNA processing	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
hydrolase activity	Hs	molecular function
ribosome biogenesis	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	721	0.0
nucleic acid binding	Hs	molecular function	721	0.0
transcription corepressor activity	Hs	molecular function	245	5.03e-70
RNA binding	Hs	molecular function	721	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	721	0.0
helicase activity	Hs	molecular function	721	0.0
receptor binding	Hs	molecular function	245	5.03e-70
protein binding	Hs	molecular function	721	0.0
ATP binding	Hs	molecular function	721	0.0
nucleus	Hs	cellular component	721	0.0
nucleoplasm	Hs	cellular component	272	9.05e-84
chromosome	Hs	cellular component	721	0.0
nucleolus	Hs	cellular component	721	0.0
cytoplasm	Hs	cellular component	721	0.0
Golgi apparatus	Hs	cellular component	245	5.03e-70
membrane	Hs	cellular component	272	9.05e-84
hydrolase activity	Hs	molecular function	721	0.0
estrogen receptor binding	Hs	molecular function	245	5.03e-70

GO (InterProScan)