Aniseed - Gene card

Gene 'KH2012:KH.C14.506'

Gene Card

Best human hits

LIN54; TESMIN

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003948

Gene Model ID

KH2012:KH.C14.506

Location

KhC14:1201870..1205023

Transcript Models and Sequences

KH2012:KH.C14.506.v1.C.SL2-1
KH2012:KH.C14.506.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002124830.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg007i04

Plate: R1CiGC16h19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
CRC	Pfam	CRC domain
Tesmin/TSO1-like_CXC	SMART	Tesmin/TSO1-like CXC domain
CRC	ProSiteProfiles	CRC domain
Lin-54_fam	PANTHER	Lin-54 family

GOSlim

11 results

GO Term	Annotation Origin	Type
DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
multicellular organism development	Orthology	biological process
spermatogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
metal ion binding	Orthology	molecular function
cellular process	Orthology	biological process
cell	Orthology	cellular component

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cellular metal ion homeostasis	Hs	biological process
multicellular organism development	Hs	biological process
spermatogenesis	Hs	biological process
response to metal ion	Hs	biological process
cell differentiation	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	338	7.30e-107
protein binding	Hs	molecular function	338	7.30e-107
nucleus	Hs	cellular component	338	7.30e-107
nucleoplasm	Hs	cellular component	338	7.30e-107
cytoplasm	Hs	cellular component	179	2.35e-49
metal ion binding	Hs	molecular function	338	7.30e-107

GO (InterProScan)