Aniseed - Gene card

Gene 'KH2012:KH.C14.456'

Gene Card

Best human hits

RPAIN

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003892

Gene Model ID

KH2012:KH.C14.456

Location

KhC14:3583217..3584488

Transcript Models and Sequences

KH2012:KH.C14.456.v1.C.ND1-1
KH2012:KH.C14.456.v1.C.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000014410
NCBI Reference Sequence	XM_018814793.1

Collections

Gateway full ORF

5 results

Gene collection 1 (N. Satoh)

2 results

cign030n23

Plate: R1CiGC42o21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
RPA_interact_C_dom	Pfam	RPA-interacting protein, C-terminal domain
RPA_interact_N_dom	Pfam	RPA-interacting protein, N-terminal domain
RIP	PANTHER	RPA-interacting protein

GOSlim

11 results

GO Term	Annotation Origin	Type
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
DNA repair	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
nucleolus	Orthology	cellular component
DNA replication	Orthology	biological process
DNA metabolic process	Orthology	biological process
intracellular protein transport	Orthology	biological process
establishment of protein localization to organelle	Orthology	biological process
nuclear body	Orthology	cellular component

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
fibrillar center	Hs	cellular component
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
DNA-dependent DNA replication	Hs	biological process
DNA repair	Hs	biological process
DNA recombination	Hs	biological process
protein import into nucleus	Hs	biological process
PML body	Hs	cellular component
macromolecular complex binding	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
fibrillar center	Hs	cellular component	78.6	9.15e-18
nucleus	Hs	cellular component	78.6	9.15e-18
cytoplasm	Hs	cellular component	78.6	9.15e-18
PML body	Hs	cellular component	78.6	9.15e-18
macromolecular complex binding	Hs	molecular function	78.6	9.15e-18
metal ion binding	Hs	molecular function	78.6	9.15e-18

GO (InterProScan)