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GENE CARD

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  1. Gene 'KH2012:KH.C14.272'

Gene Card

Best human hits

PCF11

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003694

Gene Model ID

KH2012:KH.C14.272

Location

KhC14:3439705..3454260

Transcript Models and Sequences

  KH2012:KH.C14.272.v1.A.SL1-1
KH2012:KH.C14.272.v2.A.SL1-3
KH2012:KH.C14.272.v3.A.SL1-2

External Database Gene Card

External database links

9 results

Database Gene ID
ENSEMBL ENSCING00000007329
ENSEMBL ENSCING00000007330
ENSEMBL ENSCING00000007331
ENSEMBL ENSCING00000024882
NCBI Reference Sequence XM_009862553.2
NCBI Reference Sequence XM_018814743.1
NCBI Reference Sequence XM_018814744.1
NCBI Reference Sequence XM_018814745.1
NCBI Reference Sequence XM_018814746.1
Collections

Gateway full ORF

4 results

cien57276

Plate: VES79_N07

cien79715

Plate: VES82_P19

cien184818

Plate: VES98_K19

cien222084

Plate: VES104_H16

Gene collection 1 (N. Satoh)

7 results

cieg021c18

Plate: R1CiGC18h06

citb031l18

Plate: R1CiGC31b14

ciad057a20

Plate: R1CiGC05j14

ciad055a19

Plate: R1CiGC05p05

ciad055b19

Plate: R1CiGC05p19

cits050p17

Plate: R1CiGC36g09

citb077n22

Plate: R1CiGC46k20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
CID_dom ProSiteProfiles CID domain
ENTH_VHS Gene3D ENTH/VHS
ENTH_VHS SUPERFAMILY ENTH/VHS
CID_dom SMART CID domain
RNA_pol_II-bd Pfam RNA polymerase II-binding domain

GOSlim

12 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
mRNA processing Orthology biological process
enzyme binding Orthology molecular function
RNA binding Orthology molecular function
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
RNA metabolic process Orthology biological process

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
RNA polymerase II core binding Hs molecular function
mRNA binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
mRNA cleavage factor complex Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA polyadenylation Hs biological process
mRNA cleavage Hs biological process
mRNA processing Hs biological process
mRNA 3'-end processing Hs biological process

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core binding Hs molecular function 223 1.48e-58
mRNA binding Hs molecular function 223 1.48e-58
nucleus Hs cellular component 223 1.48e-58
nucleoplasm Hs cellular component 223 1.48e-58
cytoplasm Hs cellular component 223 1.48e-58
mitochondrion Hs cellular component 223 1.48e-58
mRNA cleavage factor complex Hs cellular component 223 1.48e-58

GO (InterProScan)

No result

GO Term Analysis Type e-value

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