Aniseed - Gene card

Gene 'KH2012:KH.C14.132'

Gene Card

Best human hits

CHTOP

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003542

Gene Model ID

KH2012:KH.C14.132

Location

KhC14:1906900..1912087

Transcript Models and Sequences

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000014517
ENSEMBL	ENSCING00000018415
NCBI Reference Sequence	XM_002127305.3
NCBI Reference Sequence	XM_009862443.2
NCBI Reference Sequence	XM_009862444.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cilv075m07

Plate: R1CiGC44f07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
FoP_C	SMART	Chromatin target of PRMT1 protein, C-terminal
FoP_C	Pfam	Chromatin target of PRMT1 protein, C-terminal

GOSlim

25 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
nuclear speck	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
nucleotide binding	Orthology	molecular function
organelle organization	Orthology	biological process
cellular protein modification process	Orthology	biological process
mRNA processing	Orthology	biological process
positive regulation of hydrolase activity	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
transcription export complex	Hs	cellular component
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
termination of RNA polymerase II transcription	Hs	biological process
RNA export from nucleus	Hs	biological process
mRNA export from nucleus	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
methyl-CpG binding	Hs	molecular function
nuclear speck	Hs	cellular component
positive regulation of histone methylation	Hs	biological process
mRNA 3'-end processing	Hs	biological process
positive regulation of ATPase activity	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
mRNA transport	Hs	biological process
positive regulation of helicase activity	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transcription export complex	Hs	cellular component	65.9	3.88e-13
RNA binding	Hs	molecular function	65.9	3.88e-13
protein binding	Hs	molecular function	65.9	3.88e-13
nucleus	Hs	cellular component	65.9	3.88e-13
nucleoplasm	Hs	cellular component	65.9	3.88e-13
nucleolus	Hs	cellular component	65.9	3.88e-13
methyl-CpG binding	Hs	molecular function	65.9	3.88e-13
nuclear speck	Hs	cellular component	65.9	3.88e-13
cytoplasmic ribonucleoprotein granule	Hs	cellular component	65.9	3.88e-13

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cien57395

cien139281

Gene collection 1 (N. Satoh)

ciad066g01

cilv075m07

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)