Aniseed - Gene card

Gene Card

Best human hits

CNOT7; CNOT8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003512

Gene Model ID

KH2012:KH.C14.105

Location

KhC14:518185..521457

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000002993
NCBI Reference Sequence	NM_001078202.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

ciad052e03

Plate: R1CiGC05b13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
RNaseH_sf	Gene3D	Ribonuclease H superfamily
RNase_CAF1	Pfam	Ribonuclease CAF1
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily

GOSlim

20 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
RNA binding	Blast	molecular function
signal transducer activity	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
transcription factor binding	Blast	molecular function
membrane	Blast	cellular component
nuclear body	Blast	cellular component
nuclear speck	Blast	cellular component
hydrolase activity	Blast	molecular function
metal ion binding	Blast	molecular function
RNA metabolic process	Blast	biological process
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
macromolecular complex	Blast	cellular component
intracellular part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
3'-5'-exoribonuclease activity	Hs	molecular function	416	2.74e-148
P-body	Hs	cellular component	416	2.74e-148
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	416	2.74e-148
nucleic acid binding	Hs	molecular function	416	2.74e-148
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	416	2.74e-148
RNA binding	Hs	molecular function	416	2.74e-148
nuclease activity	Hs	molecular function	416	2.74e-148
exonuclease activity	Hs	molecular function	416	2.74e-148
exoribonuclease activity	Hs	molecular function	416	2.74e-148
poly(A)-specific ribonuclease activity	Hs	molecular function	416	2.74e-148
signal transducer activity	Hs	molecular function	416	2.74e-148
protein binding	Hs	molecular function	416	2.74e-148
intracellular	Hs	cellular component	377	7.25e-133
nucleus	Hs	cellular component	416	2.74e-148
cytoplasm	Hs	cellular component	416	2.74e-148
cytosol	Hs	cellular component	416	2.74e-148
transcription factor binding	Hs	molecular function	416	2.74e-148
membrane	Hs	cellular component	416	2.74e-148
nuclear body	Hs	cellular component	416	2.74e-148
nuclear speck	Hs	cellular component	416	2.74e-148
hydrolase activity	Hs	molecular function	416	2.74e-148
CCR4-NOT complex	Hs	cellular component	416	2.74e-148
CCR4-NOT core complex	Hs	cellular component	416	2.74e-148
metal ion binding	Hs	molecular function	416	2.74e-148
host cell PML body	Hs	cellular component	416	2.74e-148

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	Gene3D	molecular function	5.6E-114

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima81245

cien212331

Gene collection 1 (N. Satoh)

citb032j11

ciad052e03

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)