Aniseed - Gene card

Gene 'KH2012:KH.C13.13'

Gene Card

Best human hits

SURF4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003344

Gene Model ID

KH2012:KH.C13.13

Location

KhC13:620739..627980

Transcript Models and Sequences

KH2012:KH.C13.13.v1.R.ND4-1
KH2012:KH.C13.13.v2.A.SL1-1
KH2012:KH.C13.13.v3.A.ND2-1
KH2012:KH.C13.13.v3.A.nonSL6-1
KH2012:KH.C13.13.v3.A.nonSL7-1
KH2012:KH.C13.13.v3.A.nonSL8-1
KH2012:KH.C13.13.v3.A.SL3-1
KH2012:KH.C13.13.v4.A.ND5-2
KH2012:KH.C13.13.v4.A.nonSL6-2
KH2012:KH.C13.13.v4.A.nonSL7-2
KH2012:KH.C13.13.v4.A.nonSL8-2
KH2012:KH.C13.13.v4.A.SL3-2

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000002391
NCBI Reference Sequence	XM_002122719.2
NCBI Reference Sequence	XM_002122790.4

Collections

Gateway full ORF

6 results

Gene collection 1 (N. Satoh)

2 results

cicl029g09

Plate: R1CiGC12g17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Surf4	Pfam	Surfeit locus 4
Surf4	ProSitePatterns	Surfeit locus 4

GOSlim

15 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
protein binding	Orthology	molecular function
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
plasma membrane	Orthology	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
organelle organization	Orthology	biological process
cytoplasmic vesicle	Orthology	cellular component
endomembrane system	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
lysosomal membrane	Orthology	cellular component

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component
Golgi apparatus	Hs	cellular component
plasma membrane	Hs	cellular component
retrograde vesicle-mediated transport, Golgi to ER	Hs	biological process
Golgi organization	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
transport vesicle	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component
azurophil granule membrane	Hs	cellular component

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	343	6.05e-120
protein binding	Hs	molecular function	343	6.05e-120
endoplasmic reticulum	Hs	cellular component	343	6.05e-120
endoplasmic reticulum membrane	Hs	cellular component	343	6.05e-120
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component	343	6.05e-120
Golgi apparatus	Hs	cellular component	343	6.05e-120
plasma membrane	Hs	cellular component	343	6.05e-120
membrane	Hs	cellular component	343	6.05e-120
integral component of membrane	Hs	cellular component	343	6.05e-120
transport vesicle	Hs	cellular component	343	6.05e-120
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component	343	6.05e-120
azurophil granule membrane	Hs	cellular component	343	6.05e-120

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
integral component of membrane	Pfam	cellular component	9.4E-110