Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003563
NCBI Reference Sequence	XM_002120065.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl020k03

Plate: R1CiGC11g03

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
RNApol_insert_sf	Gene3D	DNA-directed RNA polymerase, insert domain superfamily
DNA-dir_RNA_pol_30-40kDasu_CS	ProSitePatterns	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
RBP11-like	SUPERFAMILY	RNA polymerase, RBP11-like subunit
RNAPI/II_AC40	CDD	DNA-directed RNA polymerases I and III subunit AC40
RNApol_insert_sf	SUPERFAMILY	DNA-directed RNA polymerase, insert domain superfamily
DNA-dir_RNA_pol_insert	Pfam	DNA-directed RNA polymerase, insert domain
DNA-dir_RNA_pol_RpoA/D/Rpb3	Pfam	DNA-directed RNA polymerase, RpoA/D/Rpb3-type
DNA-dir_RNA_pol_RpoA/D/Rpb3	SMART	DNA-directed RNA polymerase, RpoA/D/Rpb3-type
RNAPI/II_AC40	PANTHER	DNA-directed RNA polymerases I and III subunit AC40

GOSlim

19 results

GO Term	Annotation Origin	Type
DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
cytosol	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Blast	biological process
microtubule cytoskeleton	Blast	cellular component
protein dimerization activity	Orthology	molecular function
nuclear lumen	Orthology	cellular component
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
RNA biosynthetic process	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nucleolus	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
nucleoplasm part	Blast	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase I activity	Hs	molecular function
RNA polymerase III activity	Hs	molecular function
DNA binding	Hs	molecular function
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
DNA-directed RNA polymerase III complex	Hs	cellular component
DNA-directed RNA polymerase I complex	Hs	cellular component
cytosol	Hs	cellular component
transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase I promoter	Hs	biological process
termination of RNA polymerase I transcription	Hs	biological process
transcription from RNA polymerase III promoter	Hs	biological process
positive regulation of type I interferon production	Hs	biological process
positive regulation of gene expression, epigenetic	Hs	biological process
protein dimerization activity	Hs	molecular function

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase I activity	Hs	molecular function	407	1.52e-142
RNA polymerase II activity	Hs	molecular function	108	2.69e-27
RNA polymerase III activity	Hs	molecular function	407	1.52e-142
DNA binding	Hs	molecular function	407	1.52e-142
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	407	1.52e-142
protein binding	Hs	molecular function	407	1.52e-142
nucleus	Hs	cellular component	407	1.52e-142
nucleoplasm	Hs	cellular component	407	1.52e-142
DNA-directed RNA polymerase II, core complex	Hs	cellular component	108	2.69e-27
DNA-directed RNA polymerase III complex	Hs	cellular component	407	1.52e-142
DNA-directed RNA polymerase I complex	Hs	cellular component	407	1.52e-142
cytoplasm	Hs	cellular component	108	2.69e-27
cytosol	Hs	cellular component	407	1.52e-142
microtubule cytoskeleton	Hs	cellular component	108	2.69e-27
protein dimerization activity	Hs	molecular function	407	1.52e-142

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
DNA binding	ProSitePatterns	molecular function
DNA-directed 5'-3' RNA polymerase activity	SMART	molecular function	2.4E-97
transcription, DNA-templated	SMART	biological process	2.4E-97
protein dimerization activity	SUPERFAMILY	molecular function	3.92E-31

Gene Card

Best human hits

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Unique Gene ID

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Transcript Models and Sequences