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GENE CARD

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  1. Gene 'KH2012:KH.C11.82'

Gene Card

Best human hits

HNRNPL; HNRNPLL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002604

Gene Model ID

KH2012:KH.C11.82

Location

KhC11:4531433..4542463

Transcript Models and Sequences

  KH2012:KH.C11.82.v2.A.SL1-1
KH2012:KH.C11.82.v3.B.nonSL4-1
KH2012:KH.C11.82.v3.B.nonSL5-1
KH2012:KH.C11.82.v3.B.SL2-1
KH2012:KH.C11.82.v3.B.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence XM_018813955.1
NCBI Reference Sequence XM_018813956.1
Collections

Gateway full ORF

2 results

cima836567

Plate: VES63_L02

cien175888

Plate: VES97_F12

Gene collection 1 (N. Satoh)

2 results

cicl009e16

Plate: R1CiGC09m02

cieg016k21

Plate: R1CiGC18e13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom SMART RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
HnRNP-L/PTB TIGRFAM HnRNP-L/PTB

GOSlim

26 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
membrane Orthology cellular component
RNA metabolic process Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
extracellular exosome Orthology cellular component
catalytic activity Orthology molecular function
metabolic process Orthology biological process
regulation of gene expression Orthology biological process
RNA splicing Orthology biological process
positive regulation of gene expression Orthology biological process
cell communication Orthology biological process
cellular response to stress Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
negative regulation of gene expression Orthology biological process
response to organic substance Orthology biological process

GO (Orthology)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
circadian rhythm Hs biological process
membrane Hs cellular component
RNA metabolic process Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
positive regulation of RNA splicing Hs biological process
cellular response to amino acid starvation Hs biological process
ribonucleoprotein granule Hs cellular component
transcription regulatory region DNA binding Hs molecular function
pronucleus Hs cellular component
positive regulation of translation Hs biological process
negative regulation of mRNA splicing, via spliceosome Hs biological process
perinuclear region of cytoplasm Hs cellular component
extracellular exosome Hs cellular component
pre-mRNA intronic binding Hs molecular function
response to peptide Hs biological process
mRNA CDS binding Hs molecular function
catalytic activity Hs molecular function
metabolic process Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 409 1.60e-138
RNA binding Hs molecular function 409 1.60e-138
mRNA binding Hs molecular function 335 2.02e-110
mRNA 3'-UTR binding Hs molecular function 409 1.60e-138
protein binding Hs molecular function 409 1.60e-138
nucleus Hs cellular component 409 1.60e-138
nucleoplasm Hs cellular component 409 1.60e-138
cytoplasm Hs cellular component 409 1.60e-138
cytosol Hs cellular component 409 1.60e-138
membrane Hs cellular component 409 1.60e-138
intracellular ribonucleoprotein complex Hs cellular component 409 1.60e-138
ribonucleoprotein granule Hs cellular component 409 1.60e-138
transcription regulatory region DNA binding Hs molecular function 409 1.60e-138
pronucleus Hs cellular component 409 1.60e-138
perinuclear region of cytoplasm Hs cellular component 409 1.60e-138
extracellular exosome Hs cellular component 409 1.60e-138
pre-mRNA intronic binding Hs molecular function 409 1.60e-138
mRNA CDS binding Hs molecular function 409 1.60e-138

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.58E-16
RNA binding TIGRFAM molecular function 6.6E-122
nucleus TIGRFAM cellular component 6.6E-122
mRNA processing TIGRFAM biological process 6.6E-122

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