Aniseed - Gene card

Gene Card

Best human hits

PTPRD; PTPRF; PTPRQ

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002285

Gene Model ID

KH2012:KH.C11.451

Location

KhC11:2828936..2839539

Transcript Models and Sequences

KH2012:KH.C11.451.v1.B.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000021329
NCBI Reference Sequence	XM_018814105.1

Collections

Gene collection 1 (N. Satoh)

1 result

ciht014h09

Plate: R1CiGC43d17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
FN3_dom	CDD	Fibronectin type III
FN3_dom	ProSiteProfiles	Fibronectin type III
FN3_dom	SMART	Fibronectin type III
FN3_sf	SUPERFAMILY	Fibronectin type III superfamily
Ig-like_fold	Gene3D	Immunoglobulin-like fold
FN3_dom	Pfam	Fibronectin type III

GOSlim

17 results

GO Term	Annotation Origin	Type
receptor binding	Blast	molecular function
protein binding	Blast	molecular function
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
protein dephosphorylation	Blast	biological process
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
dephosphorylation	Blast	biological process
hydrolase activity	Blast	molecular function
neuron projection	Blast	cellular component
neuronal cell body	Blast	cellular component
cell adhesion molecule binding	Blast	molecular function
extracellular exosome	Blast	cellular component
transmembrane signaling receptor activity	Blast	molecular function
anion binding	Blast	molecular function
carbohydrate derivative binding	Blast	molecular function
cluster of actin-based cell projections	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
phosphoprotein phosphatase activity	Hs	molecular function	140	2.16e-33
protein tyrosine phosphatase activity	Hs	molecular function	140	2.16e-33
transmembrane receptor protein tyrosine phosphatase activity	Hs	molecular function	139	4.63e-33
receptor binding	Hs	molecular function	135	5.88e-32
protein binding	Hs	molecular function	140	2.16e-33
plasma membrane	Hs	cellular component	139	4.63e-33
integral component of plasma membrane	Hs	cellular component	139	4.63e-33
heparin binding	Hs	molecular function	139	4.63e-33
membrane	Hs	cellular component	140	2.16e-33
integral component of membrane	Hs	cellular component	140	2.16e-33
hydrolase activity	Hs	molecular function	140	2.16e-33
phosphatase activity	Hs	molecular function	140	2.16e-33
stereocilium bundle	Hs	cellular component	140	2.16e-33
chondroitin sulfate proteoglycan binding	Hs	molecular function	139	4.63e-33
neuron projection	Hs	cellular component	139	4.63e-33
neuronal cell body	Hs	cellular component	139	4.63e-33
cell adhesion molecule binding	Hs	molecular function	135	5.88e-32
extracellular exosome	Hs	cellular component	139	4.63e-33

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	4.79E-27