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  1. Species 'Molgula occidentalis' > 

Gene Card

Best human hits

FOXA1; FOXA2; FOXA3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002136

Gene Model ID

KH2012:KH.C11.313

Location

KhC11:4395578..4404794

Transcript Models and Sequences

  KH2012:KH.C11.313.v1.A.nonSL2-1
KH2012:KH.C11.313.v1.A.SL1-1
KH2012:KH.C11.313.v2.A.nonSL2-2
KH2012:KH.C11.313.v2.A.SL1-2

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000022098
NCBI Reference Sequence NM_001078523.1
NCBI Reference Sequence XM_018813880.1
Collections

Gateway full ORF

2 results

cien149371

Plate: VES93_C14

cien192729

Plate: VES100_E03

Gene collection 1 (N. Satoh)

2 results

ciad004i10

Plate: R1CiGC01i06

cicl044j20

Plate: R1CiGC13a23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

16 results

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Forkhead_box_C Pfam Forkhead box protein, C-terminal
TF_fork_head_CS_1 ProSitePatterns Fork head domain conserved site1
Fork_head_dom SMART Fork head domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Fork-head_N Pfam Fork-head N-terminal
Fork_head_dom Pfam Fork head domain
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom PRINTS Fork head domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Fork_head_dom CDD Fork head domain

GOSlim

52 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
Notch signaling pathway Orthology biological process
multicellular organism development Orthology biological process
spermatogenesis Orthology biological process
transcription factor binding Orthology molecular function
anatomical structure morphogenesis Orthology biological process
regulation of gene expression Orthology biological process
cell junction Orthology cellular component
cell differentiation Orthology biological process
positive regulation of apoptotic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
nucleolus Orthology cellular component
cellular process Orthology biological process
cell Orthology cellular component
plasma membrane region Orthology cellular component
cell projection Orthology cellular component
cytoskeletal part Orthology cellular component
organelle organization Orthology biological process
cell communication Orthology biological process
cellular response to stress Orthology biological process
animal organ development Orthology biological process
cytoskeleton Orthology cellular component
blood coagulation Orthology biological process
response to lipid Orthology biological process
metabolic process Orthology biological process
regulation of molecular function Orthology biological process
cell development Orthology biological process
neuron differentiation Orthology biological process
cell surface receptor signaling pathway Orthology biological process
positive regulation of signal transduction Orthology biological process
cell cycle Orthology biological process
cellular response to organic substance Orthology biological process
protein transport Orthology biological process
regulation of signaling Orthology biological process
cell-cell signaling Orthology biological process

GO (Orthology)

59 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
fibrillar center Hs cellular component
cellular glucose homeostasis Hs biological process
cell fate specification Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
microvillus Hs cellular component
chromatin organization Hs biological process
chromatin remodeling Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
Notch signaling pathway Hs biological process
multicellular organism development Hs biological process
spermatogenesis Hs biological process
transcription factor binding Hs molecular function
adult locomotory behavior Hs biological process
cellular response to starvation Hs biological process
anatomical structure morphogenesis Hs biological process
regulation of gene expression Hs biological process
negative regulation of epithelial to mesenchymal transition Hs biological process
actin cytoskeleton Hs cellular component
protein domain specific binding Hs molecular function
cell junction Hs cellular component
cell differentiation Hs biological process
regulation of blood coagulation Hs biological process
lung development Hs biological process
endocrine pancreas development Hs biological process
response to estradiol Hs biological process
tube morphogenesis Hs biological process
positive regulation of embryonic development Hs biological process
hormone metabolic process Hs biological process
glucose homeostasis Hs biological process
positive regulation of apoptotic process Hs biological process
negative regulation of sequence-specific DNA binding transcription factor activity Hs biological process
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
positive regulation of neuron differentiation Hs biological process
positive regulation of smoothened signaling pathway Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of mitotic cell cycle Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
anatomical structure formation involved in morphogenesis Hs biological process
neuron fate specification Hs biological process
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
regulation of cell cycle Hs biological process
regulation of insulin secretion involved in cellular response to glucose stimulus Hs biological process
dopaminergic neuron differentiation Hs biological process
primitive streak formation Hs biological process
positive regulation of gastrulation Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 232 1.88e-69
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 232 1.88e-69
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 223 8.03e-66
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 223 8.03e-66
fibrillar center Hs cellular component 223 8.03e-66
DNA binding Hs molecular function 232 1.88e-69
transcription factor activity, sequence-specific DNA binding Hs molecular function 232 1.88e-69
protein binding Hs molecular function 223 8.03e-66
nucleus Hs cellular component 232 1.88e-69
nucleoplasm Hs cellular component 232 1.88e-69
cytoplasm Hs cellular component 232 1.88e-69
microvillus Hs cellular component 223 8.03e-66
transcription factor binding Hs molecular function 232 1.88e-69
actin cytoskeleton Hs cellular component 216 8.36e-65
protein domain specific binding Hs molecular function 232 1.88e-69
cell junction Hs cellular component 232 1.88e-69
sequence-specific DNA binding Hs molecular function 232 1.88e-69
transcription regulatory region DNA binding Hs molecular function 232 1.88e-69

GO (InterProScan)

5 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 6.1E-61
regulation of transcription, DNA-templated SMART biological process 6.1E-61
transcription factor binding Pfam molecular function 8.3E-18
protein domain specific binding Pfam molecular function 8.3E-18
sequence-specific DNA binding SMART molecular function 6.1E-61

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