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GENE CARD

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  1. Gene 'KH2012:KH.C10.610'

Gene Card

Best human hits

MED13; MED13L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001846

Gene Model ID

KH2012:KH.C10.610

Location

KhC10:4767824..4787275

Transcript Models and Sequences

  KH2012:KH.C10.610.v1.A.SL1-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000007848
ENSEMBL ENSCING00000018827
ENSEMBL ENSCING00000022089
NCBI Reference Sequence XM_009861776.2
NCBI Reference Sequence XR_717438.2
Collections

Gateway full ORF

1 result

cien173081

Plate: VES96_K24

Gene collection 1 (N. Satoh)

1 result

cieg035o02

Plate: R1CiGC21a16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
Mediator_Med13_N_met/fun Pfam Mediator complex, subunit Med13, N-terminal, metazoa/fungi
Mediator_Med13 Pfam Mediator complex, subunit Med13

GOSlim

18 results

GO Term Annotation Origin Type
transcription cofactor activity Orthology molecular function
transcription coactivator activity Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
membrane Orthology cellular component
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
signal transduction Orthology biological process
response to lipid Orthology biological process
cellular response to organic substance Orthology biological process
receptor binding Orthology molecular function
transcription factor binding Orthology molecular function

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription cofactor activity Hs molecular function
transcription cofactor activity Hs molecular function
transcription coactivator activity Hs molecular function
receptor activity Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
membrane Hs cellular component
mediator complex Hs cellular component
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function
intracellular steroid hormone receptor signaling pathway Hs biological process
androgen receptor signaling pathway Hs biological process
cholesterol homeostasis Hs biological process
vitamin D receptor binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
thyroid hormone receptor binding Hs molecular function
triglyceride homeostasis Hs biological process

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription cofactor activity Hs molecular function 534 4.94e-157
transcription cofactor activity Hs molecular function 534 4.94e-157
transcription coactivator activity Hs molecular function 534 4.94e-157
receptor activity Hs molecular function 534 4.94e-157
nucleus Hs cellular component 534 4.94e-157
nucleoplasm Hs cellular component 534 4.94e-157
membrane Hs cellular component 534 4.94e-157
mediator complex Hs cellular component 534 4.94e-157
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function 534 4.94e-157
vitamin D receptor binding Hs molecular function 534 4.94e-157
thyroid hormone receptor binding Hs molecular function 534 4.94e-157

GO (InterProScan)

3 results

GO Term Analysis Type e-value
RNA polymerase II transcription cofactor activity Pfam molecular function 1.4E-53
regulation of transcription from RNA polymerase II promoter Pfam biological process 1.4E-53
mediator complex Pfam cellular component 1.4E-53

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