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GENE CARD

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Gene Card

Best human hits

CADM4; NECTIN1; NECTIN3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001822

Gene Model ID

KH2012:KH.C10.59

Location

KhC10:2527624..2544830

Transcript Models and Sequences

  KH2012:KH.C10.59.v1.A.nonSL2-1
KH2012:KH.C10.59.v1.A.nonSL3-1
KH2012:KH.C10.59.v1.A.nonSL4-1
KH2012:KH.C10.59.v1.A.SL1-1
KH2012:KH.C10.59.v2.A.nonSL2-2
KH2012:KH.C10.59.v2.A.nonSL3-2
KH2012:KH.C10.59.v2.A.nonSL4-2
KH2012:KH.C10.59.v2.A.SL1-2
KH2012:KH.C10.59.v3.A.nonSL2-2
KH2012:KH.C10.59.v3.A.nonSL3-2
KH2012:KH.C10.59.v3.A.nonSL4-2
KH2012:KH.C10.59.v3.A.SL1-2
KH2012:KH.C10.59.v4.A.nonSL2-1
KH2012:KH.C10.59.v4.A.nonSL3-1
KH2012:KH.C10.59.v4.A.nonSL4-1
KH2012:KH.C10.59.v4.A.SL1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000005562
ENSEMBL ENSCING00000023189
NCBI Reference Sequence XM_018813783.1
NCBI Reference Sequence XM_018813784.1
Collections

Gateway full ORF

2 results

cima838876

Plate: VES63_E12

cien193821

Plate: VES100_B08

Gene collection 1 (N. Satoh)

2 results

cieg009f17

Plate: R1CiGC17a17

cieg015j13

Plate: R1CiGC17j18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Ig-like_fold Gene3D Immunoglobulin-like fold
Ig-like_dom ProSiteProfiles Immunoglobulin-like domain
Ig-like_dom_sf SUPERFAMILY Immunoglobulin-like domain superfamily
CD80_C2-set Pfam CD80-like, immunoglobulin C2-set

GOSlim

26 results

GO Term Annotation Origin Type
receptor binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
adherens junction Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
cell junction Blast cellular component
axon Blast cellular component
identical protein binding Blast molecular function
protein homodimerization activity Blast molecular function
neuron projection Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
synapse Blast cellular component
postsynaptic membrane Blast cellular component
protein heterodimerization activity Blast molecular function
cell adhesion molecule binding Blast molecular function
extracellular exosome Blast cellular component
binding Blast molecular function
signaling receptor activity Blast molecular function
plasma membrane part Blast cellular component
macromolecular complex Blast cellular component
cell projection part Blast cellular component
synaptic membrane Blast cellular component
neuron part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
virus receptor activity Hs molecular function 70.5 1.06e-12
receptor activity Hs molecular function 86.7 9.39e-18
receptor binding Hs molecular function 86.7 9.39e-18
protein binding Hs molecular function 86.7 9.39e-18
extracellular region Hs cellular component 70.5 1.06e-12
plasma membrane Hs cellular component 86.7 9.39e-18
integral component of plasma membrane Hs cellular component 86.7 9.39e-18
cell-cell junction Hs cellular component 86.7 9.39e-18
adherens junction Hs cellular component 70.5 1.06e-12
cell-cell adherens junction Hs cellular component 86.7 9.39e-18
coreceptor activity Hs molecular function 70.5 1.06e-12
membrane Hs cellular component 86.7 9.39e-18
integral component of membrane Hs cellular component 86.7 9.39e-18
catenin complex Hs cellular component 70.5 1.06e-12
cell junction Hs cellular component 86.7 9.39e-18
carbohydrate binding Hs molecular function 70.5 1.06e-12
axon Hs cellular component 70.5 1.06e-12
growth cone membrane Hs cellular component 70.5 1.06e-12
presynaptic membrane Hs cellular component 70.5 1.06e-12
identical protein binding Hs molecular function 70.5 1.06e-12
protein homodimerization activity Hs molecular function 86.7 9.39e-18
neuron projection Hs cellular component 70.5 1.06e-12
intracellular membrane-bounded organelle Hs cellular component 70.5 1.06e-12
apical junction complex Hs cellular component 86.7 9.39e-18
cell-cell contact zone Hs cellular component 86.7 9.39e-18
synapse Hs cellular component 86.7 9.39e-18
postsynaptic membrane Hs cellular component 86.7 9.39e-18
virion binding Hs molecular function 70.5 1.06e-12
protein heterodimerization activity Hs molecular function 86.7 9.39e-18
cell adhesion molecule binding Hs molecular function 86.7 9.39e-18
extracellular exosome Hs cellular component 63.2 1.40e-10

GO (InterProScan)

No result

GO Term Analysis Type e-value

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