Aniseed - Gene card

Gene Card

Best human hits

DDX27; DDX46; DDX54

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001559

Gene Model ID

KH2012:KH.C10.346

Location

KhC10:2587803..2600582

Transcript Models and Sequences

KH2012:KH.C10.346.v1.A.ND1-1
KH2012:KH.C10.346.v1.A.nonSL2-1
KH2012:KH.C10.346.v1.A.nonSL3-1
KH2012:KH.C10.346.v1.A.nonSL4-1
KH2012:KH.C10.346.v1.A.nonSL5-1
KH2012:KH.C10.346.v1.A.nonSL6-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004789
NCBI Reference Sequence	XM_002130335.3
NCBI Reference Sequence	XR_001974922.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl011e07

Plate: R1CiGC09p11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
DDX54/DBP10	PANTHER	DDX54/DBP10 family
Helicase_C	CDD	Helicase, C-terminal
RNA_helicase_DEAD_Q_motif	ProSiteProfiles	RNA helicase, DEAD-box type, Q motif
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
RNA-helicase_DEAD-box_CS	ProSitePatterns	ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
DBP10_C	ProDom	DBP10, C-terminal
Helicase_C	Pfam	Helicase, C-terminal
DBP10_C	SMART	DBP10, C-terminal
Helicase_C	SMART	Helicase, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
DBP10_C	Pfam	DBP10, C-terminal
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain

GOSlim

27 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
transcription corepressor activity	Orthology	molecular function
RNA binding	Orthology	molecular function
receptor binding	Orthology	molecular function
protein binding	Blast	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
RNA processing	Orthology	biological process
membrane	Orthology	cellular component
RNA metabolic process	Orthology	biological process
nuclear speck	Blast	cellular component
hydrolase activity	Orthology	molecular function
negative regulation of nucleic acid-templated transcription	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
transcription factor binding	Orthology	molecular function
signal transduction	Orthology	biological process
response to lipid	Orthology	biological process
cellular response to organic substance	Orthology	biological process
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear body	Blast	cellular component

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
transcription corepressor activity	Hs	molecular function
RNA binding	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
receptor binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
Golgi apparatus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
RNA processing	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
membrane	Hs	cellular component
RNA metabolic process	Hs	biological process
hydrolase activity	Hs	molecular function
estrogen receptor binding	Hs	molecular function
intracellular estrogen receptor signaling pathway	Hs	biological process
negative regulation of nucleic acid-templated transcription	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	763	0.0
fibrillar center	Hs	cellular component	241	3.78e-67
nucleic acid binding	Hs	molecular function	763	0.0
transcription corepressor activity	Hs	molecular function	763	0.0
RNA binding	Hs	molecular function	763	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	763	0.0
helicase activity	Hs	molecular function	763	0.0
receptor binding	Hs	molecular function	763	0.0
protein binding	Hs	molecular function	246	2.86e-70
ATP binding	Hs	molecular function	763	0.0
nucleus	Hs	cellular component	763	0.0
nucleoplasm	Hs	cellular component	241	3.78e-67
chromosome	Hs	cellular component	246	2.86e-70
nucleolus	Hs	cellular component	763	0.0
cytoplasm	Hs	cellular component	763	0.0
Golgi apparatus	Hs	cellular component	763	0.0
Cajal body	Hs	cellular component	241	3.78e-67
membrane	Hs	cellular component	763	0.0
nuclear speck	Hs	cellular component	241	3.78e-67
hydrolase activity	Hs	molecular function	763	0.0
estrogen receptor binding	Hs	molecular function	763	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	3.6E-48
RNA binding	SMART	molecular function	4.3E-31
ATP-dependent RNA helicase activity	SMART	molecular function	4.3E-31
ATP binding	Pfam	molecular function	3.6E-48
nucleus	SMART	cellular component	4.3E-31