Aniseed - Gene card

>
>
Gene 'KH2012:KH.C10.229'

Gene Card

Best human hits

PCTP; STARD7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001433

Gene Model ID

KH2012:KH.C10.229

Location

KhC10:4040421..4046187

Transcript Models and Sequences

KH2012:KH.C10.229.v1.A.nonSL5-1
KH2012:KH.C10.229.v1.A.SL1-1
KH2012:KH.C10.229.v1.A.SL3-1
KH2012:KH.C10.229.v2.A.SL4-1
KH2012:KH.C10.229.v3.A.ND2-2

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000006422
NCBI Reference Sequence	XM_018813617.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cits033a11

Plate: R1CiGC34k11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
START_lipid-bd_dom	ProSiteProfiles	START domain
START-like_dom_sf	Gene3D	START-like domain superfamily
START_lipid-bd_dom	Pfam	START domain

GOSlim

14 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
cytosol	Orthology	cellular component
cellular biosynthetic process	Orthology	biological process
phosphate-containing compound metabolic process	Orthology	biological process
organic substance transport	Orthology	biological process
binding	Orthology	molecular function
ion transport	Orthology	biological process
cation binding	Orthology	molecular function
anion binding	Orthology	molecular function
whole membrane	Blast	cellular component
mitochondrial membrane	Blast	cellular component
bounding membrane of organelle	Blast	cellular component

GO (Orthology)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
phosphatidylcholine biosynthetic process	Hs	biological process
lipid transport	Hs	biological process
lipid binding	Hs	molecular function
phosphatidylcholine transporter activity	Hs	molecular function
phospholipid transport	Hs	biological process
phosphatidylcholine binding	Hs	molecular function

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	80.5	1.36e-18
cytoplasm	Hs	cellular component	80.5	1.36e-18
mitochondrion	Hs	cellular component	55.5	3.64e-09
mitochondrial outer membrane	Hs	cellular component	55.5	3.64e-09
cytosol	Hs	cellular component	80.5	1.36e-18
lipid binding	Hs	molecular function	80.5	1.36e-18
phosphatidylcholine transporter activity	Hs	molecular function	80.5	1.36e-18
phosphatidylcholine binding	Hs	molecular function	80.5	1.36e-18

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
lipid binding	Pfam	molecular function	8.3E-6