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GENE CARD

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Gene Card

Best human hits

AL109827.1; NFS1; SCLY

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001226

Gene Model ID

KH2012:KH.C1.937

Location

KhC1:9186793..9191563

Transcript Models and Sequences

  KH2012:KH.C1.937.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_018811675.1
Collections

Gateway full ORF

2 results

cima8914

Plate: VES56_K04

cima880376

Plate: VES68_G19

Gene collection 1 (N. Satoh)

1 result

cicl056e19

Plate: R1CiGC14p03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Cysteine_dSase PIRSF Cysteine desulfurase
PyrdxlP-dep_Trfase_major Gene3D Pyridoxal phosphate-dependent transferase, major domain
PyrdxlP-dep_Trfase_dom1 Gene3D Pyridoxal phosphate-dependent transferase domain 1
Aminotrans_V_dom Pfam Aminotransferase class V domain
PyrdxlP-dep_Trfase SUPERFAMILY Pyridoxal phosphate-dependent transferase

GOSlim

19 results

GO Term Annotation Origin Type
catalytic activity Orthology molecular function
protein binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
mitochondrial matrix Blast cellular component
cytosol Orthology cellular component
transferase activity Orthology molecular function
protein homodimerization activity Orthology molecular function
metal ion binding Blast molecular function
cellular metabolic process Orthology biological process
small molecule binding Orthology molecular function
anion binding Orthology molecular function
organic cyclic compound binding Orthology molecular function
heterocyclic compound binding Orthology molecular function
macromolecular complex Orthology cellular component
coenzyme binding Blast molecular function
cofactor binding Blast molecular function

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
catalytic activity Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
cellular amino acid metabolic process Hs biological process
selenocysteine lyase activity Hs molecular function
amino acid binding Hs molecular function
transferase activity Hs molecular function
lyase activity Hs molecular function
protein homodimerization activity Hs molecular function
vitamin B6 binding Hs molecular function
catalytic complex Hs cellular component

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
catalytic activity Hs molecular function 382 9.77e-131
protein binding Hs molecular function 382 9.77e-131
nucleus Hs cellular component 201 3.08e-60
nucleoplasm Hs cellular component 201 3.08e-60
cytoplasm Hs cellular component 382 9.77e-131
mitochondrion Hs cellular component 201 3.08e-60
mitochondrial matrix Hs cellular component 201 3.08e-60
cytosol Hs cellular component 382 9.77e-131
selenocysteine lyase activity Hs molecular function 382 9.77e-131
amino acid binding Hs molecular function 382 9.77e-131
transferase activity Hs molecular function 382 9.77e-131
lyase activity Hs molecular function 382 9.77e-131
pyridoxal phosphate binding Hs molecular function 201 3.08e-60
cysteine desulfurase activity Hs molecular function 201 3.08e-60
protein homodimerization activity Hs molecular function 382 9.77e-131
metal ion binding Hs molecular function 201 3.08e-60
iron-sulfur cluster binding Hs molecular function 201 3.08e-60
vitamin B6 binding Hs molecular function 382 9.77e-131
catalytic complex Hs cellular component 382 9.77e-131

GO (InterProScan)

1 result

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 4.8E-137

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