Aniseed - Gene card

Gene 'KH2012:KH.C1.89'

Gene Card

Best human hits

MPDU1; PQLC3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001173

Gene Model ID

KH2012:KH.C1.89

Location

KhC1:1510710..1529246

Transcript Models and Sequences

KH2012:KH.C1.89.v1.A.ND2-1
KH2012:KH.C1.89.v2.A.ND1-1
KH2012:KH.C1.89.v3.A.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000018393

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb3o21

Plate: R1CiGC29g13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
MannP-dilichol_defect-1	PIRSF	Mannose-P-dolichol utilization defect 1 protein
MannP-dilichol_defect-1	PANTHER	Mannose-P-dolichol utilization defect 1 protein
PQ-loop_rpt	Pfam	PQ-loop repeat
PQ-loop_rpt	SMART	PQ-loop repeat

GOSlim

7 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
endoplasmic reticulum membrane	Orthology	cellular component
protein folding	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
cellular protein modification process	Orthology	biological process

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
endoplasmic reticulum membrane	Hs	cellular component
protein folding	Hs	biological process
dolichol-linked oligosaccharide biosynthetic process	Hs	biological process
oligosaccharide biosynthetic process	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	131	6.53e-37
endoplasmic reticulum membrane	Hs	cellular component	131	6.53e-37
membrane	Hs	cellular component	131	6.53e-37
integral component of membrane	Hs	cellular component	131	6.53e-37
extracellular exosome	Hs	cellular component	131	6.53e-37

GO (InterProScan)