Aniseed - Gene card

Gene 'KH2012:KH.C1.872'

Gene Card

Best human hits

RDH12; RDH13; RDH14

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001154

Gene Model ID

KH2012:KH.C1.872

Location

KhC1:3141179..3144486

Transcript Models and Sequences

KH2012:KH.C1.872.v1.A.SL1-1
KH2012:KH.C1.872.v1.A.SL2-1
KH2012:KH.C1.872.v1.A.SL3-1
KH2012:KH.C1.872.v1.A.SL4-1
KH2012:KH.C1.872.v1.A.SL5-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002130466.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

ciad098l24

Plate: R1CiGC37a16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
SDR_fam	PRINTS	Short-chain dehydrogenase/reductase SDR
NAD(P)-bd_dom_sf	SUPERFAMILY	NAD(P)-binding domain superfamily
SDR_fam	Pfam	Short-chain dehydrogenase/reductase SDR

GOSlim

25 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
lysosomal membrane	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
visual perception	Orthology	biological process
membrane	Orthology	cellular component
response to stimulus	Orthology	biological process
oxidation-reduction process	Orthology	biological process
intracellular protein transport	Orthology	biological process
integral component of membrane	Orthology	cellular component
cellular metabolic process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
catalytic activity	Orthology	molecular function
plasma membrane region	Orthology	cellular component
neuron part	Orthology	cellular component
anatomical structure formation involved in morphogenesis	Orthology	biological process
animal organ development	Orthology	biological process
G-protein coupled receptor signaling pathway	Orthology	biological process
regulation of signal transduction	Orthology	biological process
neuron development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
retinoid metabolic process	Hs	biological process
retinol dehydrogenase activity	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
visual perception	Hs	biological process
membrane	Hs	cellular component
oxidoreductase activity	Hs	molecular function
retinol metabolic process	Hs	biological process
photoreceptor cell maintenance	Hs	biological process
response to stimulus	Hs	biological process
NADP-retinol dehydrogenase activity	Hs	molecular function
oxidation-reduction process	Hs	biological process
photoreceptor inner segment membrane	Hs	cellular component
photoreceptor inner segment	Hs	cellular component
intracellular protein transport	Hs	biological process
retina layer formation	Hs	biological process
integral component of membrane	Hs	cellular component
adaptation of rhodopsin mediated signaling	Hs	biological process
vesicle-mediated transport	Hs	biological process
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Hs	molecular function
eye photoreceptor cell development	Hs	biological process
retinal metabolic process	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
retinol dehydrogenase activity	Hs	molecular function	175	1.93e-54
protein binding	Hs	molecular function	175	1.93e-54
intracellular	Hs	cellular component	175	1.93e-54
nucleus	Hs	cellular component	175	4.35e-54
mitochondrion	Hs	cellular component	175	4.35e-54
mitochondrial inner membrane	Hs	cellular component	166	2.24e-51
lysosomal membrane	Hs	cellular component	175	4.35e-54
endoplasmic reticulum	Hs	cellular component	175	4.35e-54
endoplasmic reticulum membrane	Hs	cellular component	175	4.35e-54
alcohol dehydrogenase (NADP+) activity	Hs	molecular function	175	4.35e-54
membrane	Hs	cellular component	175	4.35e-54
oxidoreductase activity	Hs	molecular function	175	1.93e-54
NADP-retinol dehydrogenase activity	Hs	molecular function	175	1.93e-54
photoreceptor inner segment membrane	Hs	cellular component	175	1.93e-54

GO (InterProScan)