Aniseed - Gene card

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Gene 'KH2012:KH.C1.611'

Gene Card

Best human hits

TGDS; TSTA3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000866

Gene Model ID

KH2012:KH.C1.611

Location

KhC1:6566892..6569877

Transcript Models and Sequences

KH2012:KH.C1.611.v1.A.nonSL1-1
KH2012:KH.C1.611.v1.A.nonSL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005624
NCBI Reference Sequence	XM_002124030.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb043k16

Plate: R1CiGC33e08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
NAD(P)-bd_dom_sf	SUPERFAMILY	NAD(P)-binding domain superfamily
GDP_fucose/colitose_synth	Hamap	GDP-L-fucose synthase/GDP-L-colitose synthase
GDP_fucose/colitose_synth	CDD	GDP-L-fucose synthase/GDP-L-colitose synthase
Epimerase_deHydtase	Pfam	NAD-dependent epimerase/dehydratase

GOSlim

9 results

GO Term	Annotation Origin	Type
catalytic activity	Orthology	molecular function
cytosol	Orthology	cellular component
metabolic process	Orthology	biological process
identical protein binding	Orthology	molecular function
coenzyme binding	Orthology	molecular function
oxidation-reduction process	Orthology	biological process
extracellular exosome	Orthology	cellular component
cellular metabolic process	Orthology	biological process
nucleobase-containing compound metabolic process	Orthology	biological process

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
catalytic activity	Hs	molecular function
cytosol	Hs	cellular component
metabolic process	Hs	biological process
electron carrier activity	Hs	molecular function
nucleotide-sugar biosynthetic process	Hs	biological process
oxidoreductase activity	Hs	molecular function
isomerase activity	Hs	molecular function
racemase and epimerase activity, acting on carbohydrates and derivatives	Hs	molecular function
GDP-mannose metabolic process	Hs	biological process
electron transport chain	Hs	biological process
'de novo' GDP-L-fucose biosynthetic process	Hs	biological process
GDP-4-dehydro-D-rhamnose reductase activity	Hs	molecular function
identical protein binding	Hs	molecular function
GDP-L-fucose synthase activity	Hs	molecular function
coenzyme binding	Hs	molecular function
oxidation-reduction process	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
catalytic activity	Hs	molecular function	454	3.47e-162
cytosol	Hs	cellular component	454	3.47e-162
dTDP-glucose 4,6-dehydratase activity	Hs	molecular function	65.1	8.77e-12
electron carrier activity	Hs	molecular function	454	3.47e-162
oxidoreductase activity	Hs	molecular function	454	3.47e-162
lyase activity	Hs	molecular function	65.1	8.77e-12
isomerase activity	Hs	molecular function	454	3.47e-162
racemase and epimerase activity, acting on carbohydrates and derivatives	Hs	molecular function	454	3.47e-162
GDP-4-dehydro-D-rhamnose reductase activity	Hs	molecular function	454	3.47e-162
identical protein binding	Hs	molecular function	454	3.47e-162
GDP-L-fucose synthase activity	Hs	molecular function	454	3.47e-162
coenzyme binding	Hs	molecular function	454	3.47e-162
extracellular exosome	Hs	cellular component	454	3.47e-162

GO (InterProScan)