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GENE CARD

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  1. Gene 'KH2012:KH.C1.466'

Gene Card

Best human hits

RIDA

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000708

Gene Model ID

KH2012:KH.C1.466

Location

KhC1:4274598..4277137

Transcript Models and Sequences

  KH2012:KH.C1.466.v1.A.SL1-1
KH2012:KH.C1.466.v1.A.SL2-1
KH2012:KH.C1.466.v2.A.SL3-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

cima856331

Plate: VES63_F21

cien220306

Plate: VES104_E10

Gene collection 1 (N. Satoh)

1 result

cicl005g22

Plate: R1CiGC08j06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
YjgF/YER057c/UK114 Pfam YjgF/YER057c/UK114 family
RidA_CS ProSitePatterns RidA, conserved site
RutC-like_sf Gene3D RutC-like superfamily
RidA TIGRFAM RidA family
RutC-like_sf SUPERFAMILY RutC-like superfamily
YjgF/YER057c/UK114 PANTHER YjgF/YER057c/UK114 family

GOSlim

20 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
peroxisome Orthology cellular component
cytosol Orthology cellular component
brain development Orthology biological process
hydrolase activity Orthology molecular function
response to lipid Orthology biological process
protein homodimerization activity Orthology molecular function
ion binding Orthology molecular function
transition metal ion binding Orthology molecular function
extracellular exosome Orthology cellular component
animal organ development Orthology biological process
RNA metabolic process Orthology biological process
negative regulation of gene expression Orthology biological process
small molecule binding Orthology molecular function
anion binding Orthology molecular function
negative regulation of cell proliferation Orthology biological process

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
kidney development Hs biological process
RNA binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
peroxisome Hs cellular component
cytosol Hs cellular component
brain development Hs biological process
hydrolase activity Hs molecular function
endoribonuclease activity, producing 3'-phosphomonoesters Hs molecular function
negative regulation of translation Hs biological process
deaminase activity Hs molecular function
lung development Hs biological process
response to lipid Hs biological process
long-chain fatty acid binding Hs molecular function
protein homodimerization activity Hs molecular function
ion binding Hs molecular function
transition metal ion binding Hs molecular function
negative regulation of epithelial cell proliferation Hs biological process
extracellular exosome Hs cellular component
G1 to G0 transition Hs biological process
RNA phosphodiester bond hydrolysis, endonucleolytic Hs biological process
platinum binding Hs molecular function
xenon atom binding Hs molecular function

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 126 2.67e-38
nucleus Hs cellular component 126 2.67e-38
cytoplasm Hs cellular component 126 2.67e-38
mitochondrion Hs cellular component 126 2.67e-38
mitochondrial matrix Hs cellular component 126 2.67e-38
peroxisome Hs cellular component 126 2.67e-38
cytosol Hs cellular component 126 2.67e-38
hydrolase activity Hs molecular function 126 2.67e-38
endoribonuclease activity, producing 3'-phosphomonoesters Hs molecular function 126 2.67e-38
deaminase activity Hs molecular function 126 2.67e-38
long-chain fatty acid binding Hs molecular function 126 2.67e-38
protein homodimerization activity Hs molecular function 126 2.67e-38
ion binding Hs molecular function 126 2.67e-38
transition metal ion binding Hs molecular function 126 2.67e-38
extracellular exosome Hs cellular component 126 2.67e-38
platinum binding Hs molecular function 126 2.67e-38
xenon atom binding Hs molecular function 126 2.67e-38

GO (InterProScan)

No result

GO Term Analysis Type e-value

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