Aniseed - Gene card

Gene 'KH2012:KH.C1.190'

Gene Card

Best human hits

ATG10; ATG3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000404

Gene Model ID

KH2012:KH.C1.190

Location

KhC1:3748199..3755873

Transcript Models and Sequences

KH2012:KH.C1.190.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003459
NCBI Reference Sequence	XM_002127397.4
NCBI Reference Sequence	XM_018812713.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv019f03

Plate: R1CiGC26p09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Autophagy-rel_prot_3_N	Pfam	Autophagy-related protein 3, N-terminal
Autophagy-rel_prot_3	Pfam	Autophagy-related protein 3
Autophagy-rel_prot_3_C	Pfam	Autophagy-related protein 3, C-terminal

GOSlim

17 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cellular protein modification process	Orthology	biological process
protein targeting to membrane	Orthology	biological process
protein transport	Orthology	biological process
protein ubiquitination	Orthology	biological process
transferase activity	Orthology	molecular function
ubiquitin-like protein transferase activity	Orthology	molecular function
enzyme binding	Orthology	molecular function
ligase activity	Orthology	molecular function
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle organization	Orthology	biological process
apoptotic process	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
autophagosome assembly	Hs	biological process
cytoplasmic ubiquitin ligase complex	Hs	cellular component
autophagy of mitochondrion	Hs	biological process
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cellular protein modification process	Hs	biological process
protein targeting to membrane	Hs	biological process
autophagy	Hs	biological process
protein transport	Hs	biological process
macroautophagy	Hs	biological process
protein ubiquitination	Hs	biological process
transferase activity	Hs	molecular function
Atg8 ligase activity	Hs	molecular function
Atg12 transferase activity	Hs	molecular function
ubiquitin-like protein transferase activity	Hs	molecular function
enzyme binding	Hs	molecular function
mitochondrial fragmentation involved in apoptotic process	Hs	biological process
autophagy of nucleus	Hs	biological process
regulation of cilium assembly	Hs	biological process

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
cytoplasmic ubiquitin ligase complex	Hs	cellular component	405	5.98e-143
protein binding	Hs	molecular function	405	5.98e-143
intracellular	Hs	cellular component	41.2	3.04e-04
cytoplasm	Hs	cellular component	405	5.98e-143
cytosol	Hs	cellular component	405	5.98e-143
transferase activity	Hs	molecular function	405	5.98e-143
Atg8 ligase activity	Hs	molecular function	405	5.98e-143
Atg12 transferase activity	Hs	molecular function	405	5.98e-143
ubiquitin-like protein transferase activity	Hs	molecular function	405	5.98e-143
enzyme binding	Hs	molecular function	405	5.98e-143

GO (InterProScan)