Aniseed - Gene card

Gene Card

Best human hits

FBXO24; FBXO25; FBXO32

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000189

Gene Model ID

KH2012:KH.C1.117

Location

KhC1:4775536..4782058

Transcript Models and Sequences

KH2012:KH.C1.117.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000012872
ENSEMBL	ENSCING00000019278
NCBI Reference Sequence	XM_002121648.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciht005c22

Plate: R1CiGC43c12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
F-box_dom	SMART	F-box domain
F-box_dom	ProSiteProfiles	F-box domain
F-box_dom	Pfam	F-box domain
F-box-like_dom_sf	SUPERFAMILY	F-box-like domain superfamily

GOSlim

15 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
actin binding	Orthology	molecular function
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
protein ubiquitination	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle part	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
cellular protein modification process	Orthology	biological process

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ubiquitin ligase complex	Hs	cellular component
protein polyubiquitination	Hs	biological process
actin binding	Hs	molecular function
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
protein ubiquitination	Hs	biological process
SCF ubiquitin ligase complex	Hs	cellular component
Z disc	Hs	cellular component
post-translational protein modification	Hs	biological process

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	155	7.73e-44
actin binding	Hs	molecular function	155	7.73e-44
ubiquitin-protein transferase activity	Hs	molecular function	160	4.36e-46
protein binding	Hs	molecular function	160	4.36e-46
nucleus	Hs	cellular component	160	4.36e-46
nucleoplasm	Hs	cellular component	160	4.36e-46
cytoplasm	Hs	cellular component	160	4.36e-46
cytosol	Hs	cellular component	160	4.36e-46
SCF ubiquitin ligase complex	Hs	cellular component	160	4.36e-46
Z disc	Hs	cellular component	160	4.36e-46

GO (InterProScan)