Aniseed - Gene card

Gene 'Harore.CG.MTP2014.S8...'

Gene Card

Best human hits

PAX7; VSX1; VSX2

Species

H.roretzi

Unique Gene ID

Harore.g00014423

Gene Model ID

Harore.CG.MTP2014.S817.g14423

Location

S817:234..1050

Transcript Models and Sequences

Harore.CG.MTP2014.S817.g14423.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	SMART	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
CVC	ProSiteProfiles	CVC domain

GOSlim

14 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
visual perception	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
neuron development	Orthology	biological process
response to stimulus	Orthology	biological process

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
visual perception	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
neuron development	Hs	biological process
response to stimulus	Hs	biological process

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	170	8.23e-53
transcription factor activity, RNA polymerase II core promoter sequence-specific	Hs	molecular function	87.0	9.69e-21
DNA binding	Hs	molecular function	170	8.23e-53
chromatin binding	Hs	molecular function	170	8.23e-53
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	170	8.23e-53
nucleus	Hs	cellular component	170	8.23e-53
sequence-specific DNA binding	Hs	molecular function	170	8.23e-53
transcription regulatory region DNA binding	Hs	molecular function	170	8.23e-53

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.5E-23
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function