Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
CoA_lig_alpha	Hamap	Succinyl-CoA ligase, alpha subunit
CoA-bd	SMART	CoA-binding
NAD(P)-bd_dom_sf	SUPERFAMILY	NAD(P)-binding domain superfamily
CoA_lig_alpha	TIGRFAM	Succinyl-CoA ligase, alpha subunit
Cit_synth/succinyl-CoA_lig_AS	ProSitePatterns	ATP-citrate lyase/succinyl-CoA ligase, active site
Succinyl-CoA_synth-like	Gene3D	Succinyl-CoA synthetase-like
CoA-bd	Pfam	CoA-binding
CoA_ligase	Pfam	ATP-citrate lyase/succinyl-CoA ligase
Succinyl-CoA_synth-like	SUPERFAMILY	Succinyl-CoA synthetase-like
CoA_lig_alpha	PIRSF	Succinyl-CoA ligase, alpha subunit
Citrt_syn/SCS-alpha_CS	ProSitePatterns	ATP-citrate lyase/succinyl-CoA ligase, conserved site

GOSlim

30 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
RNA binding	Orthology	molecular function
catalytic activity	Orthology	molecular function
protein binding	Blast	molecular function
ATP binding	Blast	molecular function
extracellular region	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
metabolic process	Orthology	biological process
membrane	Blast	cellular component
transferase activity	Blast	molecular function
ligase activity	Orthology	molecular function
metal ion binding	Blast	molecular function
cofactor binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
oxidation-reduction process	Orthology	biological process
cellular metabolic process	Orthology	biological process
cytoplasmic part	Blast	cellular component
macromolecular complex	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
lysosome	Blast	cellular component
vacuolar part	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component
intracellular organelle part	Blast	cellular component

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
RNA binding	Hs	molecular function
catalytic activity	Hs	molecular function
succinate-CoA ligase (ADP-forming) activity	Hs	molecular function
succinate-CoA ligase (GDP-forming) activity	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial matrix	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
tricarboxylic acid cycle	Hs	biological process
metabolic process	Hs	biological process
ligase activity	Hs	molecular function
cofactor binding	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	406	1.35e-142
RNA binding	Hs	molecular function	406	1.35e-142
catalytic activity	Hs	molecular function	406	1.35e-142
ATP citrate synthase activity	Hs	molecular function	88.2	4.43e-19
succinate-CoA ligase (ADP-forming) activity	Hs	molecular function	406	1.35e-142
succinate-CoA ligase (GDP-forming) activity	Hs	molecular function	406	1.35e-142
protein binding	Hs	molecular function	88.2	4.43e-19
ATP binding	Hs	molecular function	88.2	4.43e-19
extracellular region	Hs	cellular component	88.2	4.43e-19
nucleoplasm	Hs	cellular component	88.2	4.43e-19
cytoplasm	Hs	cellular component	88.2	4.43e-19
mitochondrion	Hs	cellular component	406	1.35e-142
mitochondrial inner membrane	Hs	cellular component	406	1.35e-142
mitochondrial matrix	Hs	cellular component	406	1.35e-142
cytosol	Hs	cellular component	406	1.35e-142
plasma membrane	Hs	cellular component	406	1.35e-142
citrate lyase complex	Hs	cellular component	88.2	4.43e-19
membrane	Hs	cellular component	88.2	4.43e-19
transferase activity	Hs	molecular function	88.2	4.43e-19
lyase activity	Hs	molecular function	88.2	4.43e-19
ligase activity	Hs	molecular function	406	1.35e-142
azurophil granule lumen	Hs	cellular component	88.2	4.43e-19
metal ion binding	Hs	molecular function	88.2	4.43e-19
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	Hs	molecular function	88.2	4.43e-19
cofactor binding	Hs	molecular function	406	1.35e-142
extracellular exosome	Hs	cellular component	406	1.35e-142
ficolin-1-rich granule lumen	Hs	cellular component	88.2	4.43e-19

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
catalytic activity	TIGRFAM	molecular function	4.4E-131
metabolic process	TIGRFAM	biological process	4.4E-131
cofactor binding	SMART	molecular function	2.9E-32

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location