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GENE CARD

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  1. Gene 'Harore.CG.MTP2014.S6...'

Gene Card

Best human hits

LIN28B; YBX1; YBX2

Species

H.roretzi

Unique Gene ID

Harore.g00011389

Gene Model ID

Harore.CG.MTP2014.S649.g11389

Location

S649:25446..31206

Transcript Models and Sequences

  Harore.CG.MTP2014.S649.g11389.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Cold-shock_CS ProSitePatterns Cold-shock conserved site
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
CSP_DNA-bd PRINTS Cold-shock protein, DNA-binding
CSD SMART Cold shock domain
CSP_DNA-bd CDD Cold-shock protein, DNA-binding

GOSlim

26 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
zinc ion binding Blast molecular function
nuclear membrane Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
nuclear part Blast cellular component
macromolecular complex Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 112 1.14e-27
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 112 1.14e-27
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 112 1.14e-27
fibrillar center Hs cellular component 141 1.63e-38
nucleic acid binding Hs molecular function 141 1.63e-38
DNA binding Hs molecular function 141 1.63e-38
chromatin binding Hs molecular function 112 1.14e-27
double-stranded DNA binding Hs molecular function 112 1.14e-27
single-stranded DNA binding Hs molecular function 112 1.14e-27
transcription factor activity, sequence-specific DNA binding Hs molecular function 112 1.14e-27
RNA binding Hs molecular function 141 1.63e-38
protein binding Hs molecular function 112 1.14e-27
extracellular region Hs cellular component 112 1.14e-27
nucleus Hs cellular component 141 1.63e-38
nucleoplasm Hs cellular component 112 1.14e-27
U12-type spliceosomal complex Hs cellular component 112 1.14e-27
nucleolus Hs cellular component 68.9 2.49e-13
cytoplasm Hs cellular component 141 1.63e-38
cytosol Hs cellular component 112 1.14e-27
zinc ion binding Hs molecular function 68.9 2.49e-13
cytoplasmic stress granule Hs cellular component 112 1.14e-27
intracellular ribonucleoprotein complex Hs cellular component 112 1.14e-27
nuclear membrane Hs cellular component 112 1.14e-27
intracellular membrane-bounded organelle Hs cellular component 112 1.14e-27
metal ion binding Hs molecular function 68.9 2.49e-13
GTPase binding Hs molecular function 112 1.14e-27
extracellular exosome Hs cellular component 112 1.14e-27
CRD-mediated mRNA stability complex Hs cellular component 112 1.14e-27
histone pre-mRNA 3'end processing complex Hs cellular component 112 1.14e-27

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 5.6E-21
DNA binding Pfam molecular function 1.0E-23
regulation of transcription, DNA-templated Pfam biological process 1.0E-23

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