Aniseed - Gene card

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Genomicus Synteny Browser

Regulatory Regions

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
HTH_motif	PRINTS	Helix-turn-helix motif
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	SMART	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain

GOSlim

34 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
brain development	Orthology	biological process
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
head development	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
system development	Orthology	biological process
neuron differentiation	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
anatomical structure development	Orthology	biological process
animal organ development	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
Notch signaling pathway	Orthology	biological process
cell development	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
RNA binding	Blast	molecular function

GO (Orthology)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
skeletal system development	Hs	biological process
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
nervous system development	Hs	biological process
proximal/distal pattern formation	Hs	biological process
subpallium development	Hs	biological process
forebrain neuron differentiation	Hs	biological process
cell differentiation	Hs	biological process
embryonic limb morphogenesis	Hs	biological process
negative regulation of BMP signaling pathway	Hs	biological process
epithelial cell differentiation	Hs	biological process
inner ear morphogenesis	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of cell differentiation	Hs	biological process
negative regulation of Notch signaling pathway	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of photoreceptor cell differentiation	Hs	biological process
anatomical structure formation involved in morphogenesis	Hs	biological process
embryonic skeletal system development	Hs	biological process
positive regulation of epithelial cell proliferation	Hs	biological process
palate development	Hs	biological process
head development	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
positive regulation of amacrine cell differentiation	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	142	1.23e-40
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	142	1.23e-40
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	129	6.94e-35
DNA binding	Hs	molecular function	142	1.23e-40
chromatin binding	Hs	molecular function	142	1.23e-40
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	137	1.59e-38
single-stranded RNA binding	Hs	molecular function	129	6.94e-35
protein binding	Hs	molecular function	142	1.23e-40
nucleus	Hs	cellular component	142	1.23e-40
sequence-specific DNA binding	Hs	molecular function	142	1.23e-40

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	2.3E-24
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function

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