Login
Help

GENE CARD

Submit your Data

  1. Gene 'Harore.CG.MTP2014.S5...'

Gene Card

Best human hits

HOXA10; HOXC10; HOXD10

Species

H.roretzi

Unique Gene ID

Harore.g00005787

Gene Model ID

Harore.CG.MTP2014.S54.g05787

Location

S54:154648..159183

Transcript Models and Sequences

  Harore.CG.MTP2014.S54.g05787.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom Pfam Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox_dom SMART Homeobox domain
Homeobox_dom CDD Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
nuclear body Blast cellular component
sequence-specific DNA binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 127 2.41e-32
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 129 2.12e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 127 2.41e-32
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 129 2.12e-32
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 127 2.41e-32
DNA binding Hs molecular function 129 2.12e-32
chromatin binding Hs molecular function 127 2.41e-32
transcription factor activity, sequence-specific DNA binding Hs molecular function 127 2.41e-32
protein binding Hs molecular function 129 2.12e-32
nucleus Hs cellular component 129 2.12e-32
nucleoplasm Hs cellular component 127 2.41e-32
transcription factor complex Hs cellular component 129 2.12e-32
cytoplasm Hs cellular component 129 2.12e-32
cytosol Hs cellular component 127 2.41e-32
nuclear body Hs cellular component 127 2.58e-32
cyclin-dependent protein kinase activating kinase holoenzyme complex Hs cellular component 127 2.58e-32
cytoplasmic ribonucleoprotein granule Hs cellular component 127 2.41e-32
histone deacetylase binding Hs molecular function 129 2.12e-32
sequence-specific DNA binding Hs molecular function 129 2.12e-32

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.3E-27
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function