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GENE CARD

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Gene Card

Best human hits

COL12A1; FN1; TNN

Species

H.roretzi

Unique Gene ID

Harore.g00015877

Gene Model ID

Harore.CG.MTP2014.S358.g15877

Location

S358:40993..52413

Transcript Models and Sequences

  Harore.CG.MTP2014.S358.g15877.01.t

External Database Gene Card

External database links

No result

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WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
FN3_dom CDD Fibronectin type III
FN3_dom ProSiteProfiles Fibronectin type III
FN3_sf SUPERFAMILY Fibronectin type III superfamily
FN3_dom Pfam Fibronectin type III
LCCL Pfam LCCL domain
LCCL_sf Gene3D LCCL domain superfamily
Ig-like_fold Gene3D Immunoglobulin-like fold
LCCL_sf SUPERFAMILY LCCL domain superfamily
FN3_dom SMART Fibronectin type III
LCCL ProSiteProfiles LCCL domain
LCCL SMART LCCL domain

GOSlim

33 results

GO Term Annotation Origin Type
receptor binding Blast molecular function
integrin binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
protein C-terminus binding Blast molecular function
cell surface Blast cellular component
apical plasma membrane Blast cellular component
enzyme binding Blast molecular function
identical protein binding Blast molecular function
neuron projection Blast cellular component
neuronal cell body Blast cellular component
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
macromolecular complex binding Blast molecular function
macromolecular complex Blast cellular component
extracellular region part Blast cellular component
cytoplasmic part Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
peptidase activity Blast molecular function
positive regulation of hydrolase activity Blast biological process
enzyme activator activity Blast molecular function
structural molecule activity Blast molecular function
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
cell projection part Blast cellular component
axon Blast cellular component
synapse part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protease binding Hs molecular function 102 1.48e-21
receptor binding Hs molecular function 102 1.48e-21
integrin binding Hs molecular function 147 8.85e-36
protein binding Hs molecular function 147 8.85e-36
collagen binding Hs molecular function 102 1.48e-21
extracellular region Hs cellular component 147 8.85e-36
fibrinogen complex Hs cellular component 102 1.48e-21
proteinaceous extracellular matrix Hs cellular component 147 8.85e-36
collagen trimer Hs cellular component 94.4 2.99e-19
collagen type XII trimer Hs cellular component 94.4 2.99e-19
basement membrane Hs cellular component 102 1.48e-21
basal lamina Hs cellular component 102 1.48e-21
extracellular space Hs cellular component 102 1.48e-21
endoplasmic reticulum lumen Hs cellular component 102 1.48e-21
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 102 1.48e-21
protein C-terminus binding Hs molecular function 102 1.48e-21
heparin binding Hs molecular function 102 1.48e-21
cell surface Hs cellular component 147 8.85e-36
apical plasma membrane Hs cellular component 102 1.48e-21
peptidase activator activity Hs molecular function 102 1.48e-21
enzyme binding Hs molecular function 102 1.48e-21
extracellular matrix structural constituent conferring tensile strength Hs molecular function 94.4 2.99e-19
extracellular matrix Hs cellular component 102 1.48e-21
platelet alpha granule lumen Hs cellular component 102 1.48e-21
identical protein binding Hs molecular function 147 8.85e-36
neuron projection Hs cellular component 147 8.85e-36
neuronal cell body Hs cellular component 147 8.85e-36
chaperone binding Hs molecular function 102 1.48e-21
extracellular exosome Hs cellular component 102 1.48e-21
blood microparticle Hs cellular component 102 1.48e-21
CA3 pyramidal cell dendrite Hs cellular component 147 8.85e-36
disordered domain specific binding Hs molecular function 102 1.48e-21
extracellular vesicle Hs cellular component 94.4 2.99e-19
hippocampal mossy fiber expansion Hs cellular component 147 8.85e-36

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 4.92E-21

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