Aniseed - Gene card

Gene 'Harore.CG.MTP2014.S1...'

Gene Card

Best human hits

ZMAT1; ZMAT4; ZNF346

Species

H.roretzi

Unique Gene ID

Harore.g00011070

Gene Model ID

Harore.CG.MTP2014.S16.g11070

Location

S16:462859..476317

Transcript Models and Sequences

Harore.CG.MTP2014.S16.g11070.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Matrin/U1-like-C_Znf_C2H2	SMART	Matrin/U1-C-like, C2H2-type zinc finger

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
zinc ion binding	Orthology	molecular function
enzyme binding	Orthology	molecular function
positive regulation of apoptotic process	Orthology	biological process
metal ion binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
apoptotic process	Orthology	biological process

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
p53 binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
double-stranded RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
zinc ion binding	Hs	molecular function
enzyme binding	Hs	molecular function
miRNA binding	Hs	molecular function
positive regulation of apoptotic process	Hs	biological process
metal ion binding	Hs	molecular function
intrinsic apoptotic signaling pathway by p53 class mediator	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
p53 binding	Hs	molecular function	78.2	3.59e-17
nucleic acid binding	Hs	molecular function	78.2	3.59e-17
DNA binding	Hs	molecular function	78.2	3.59e-17
RNA binding	Hs	molecular function	78.2	3.59e-17
double-stranded RNA binding	Hs	molecular function	63.9	1.13e-11
protein binding	Hs	molecular function	78.2	3.59e-17
nucleus	Hs	cellular component	78.2	3.59e-17
nucleolus	Hs	cellular component	63.9	1.13e-11
cytoplasm	Hs	cellular component	63.9	1.13e-11
zinc ion binding	Hs	molecular function	78.2	3.59e-17
enzyme binding	Hs	molecular function	63.9	1.13e-11
miRNA binding	Hs	molecular function	63.9	1.13e-11
metal ion binding	Hs	molecular function	78.2	3.59e-17

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	3.8E-5
zinc ion binding	SMART	molecular function	3.8E-5