Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
HAT	SMART	HAT (Half-A-TPR) repeat
RRM_dom	SMART	RNA recognition motif domain
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
SART3_RRM1	CDD	SART3, RNA recognition motif 1
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

34 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
cell morphogenesis	Orthology	biological process
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
protein C-terminus binding	Blast	molecular function
RNA splicing	Orthology	biological process
regulation of gene expression	Orthology	biological process
membrane	Blast	cellular component
nuclear speck	Orthology	cellular component
identical protein binding	Blast	molecular function
extracellular exosome	Blast	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle organization	Orthology	biological process
nuclear body	Orthology	cellular component
cell proliferation	Orthology	biological process
animal organ development	Orthology	biological process
immune system process	Orthology	biological process
cell division	Orthology	biological process
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
enzyme binding	Orthology	molecular function
cell periphery	Blast	cellular component
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
spliceosomal tri-snRNP complex assembly	Hs	biological process
spliceosomal snRNP assembly	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
cell morphogenesis	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
U6atac snRNP	Hs	cellular component
cytoplasm	Hs	cellular component
nucleosome assembly	Hs	biological process
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
regulation of gene expression	Hs	biological process
Cajal body	Hs	cellular component
nuclear speck	Hs	cellular component
U6 snRNA binding	Hs	molecular function
U4 snRNA binding	Hs	molecular function
U6atac snRNA binding	Hs	molecular function
histone binding	Hs	molecular function
U4/U6 snRNP	Hs	cellular component
hematopoietic stem cell proliferation	Hs	biological process
positive regulation of histone deubiquitination	Hs	biological process
ubiquitin-specific protease binding	Hs	molecular function

GO (Blast)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	617	0.0
DNA binding	Hs	molecular function	72.0	1.01e-12
RNA binding	Hs	molecular function	617	0.0
mRNA binding	Hs	molecular function	68.9	7.33e-12
protein binding	Hs	molecular function	617	0.0
nucleus	Hs	cellular component	617	0.0
nucleoplasm	Hs	cellular component	617	0.0
U6atac snRNP	Hs	cellular component	617	0.0
nucleolus	Hs	cellular component	72.0	1.01e-12
cytoplasm	Hs	cellular component	617	0.0
cytosol	Hs	cellular component	68.9	7.33e-12
cell cortex	Hs	cellular component	72.0	1.01e-12
protein C-terminus binding	Hs	molecular function	72.0	1.01e-12
poly(A) binding	Hs	molecular function	68.9	7.33e-12
poly(U) RNA binding	Hs	molecular function	68.9	7.33e-12
cytoplasmic stress granule	Hs	cellular component	68.9	7.33e-12
Cajal body	Hs	cellular component	617	0.0
membrane	Hs	cellular component	72.0	1.01e-12
nuclear speck	Hs	cellular component	617	0.0
U6 snRNA binding	Hs	molecular function	617	0.0
intracellular ribonucleoprotein complex	Hs	cellular component	72.0	1.01e-12
U4 snRNA binding	Hs	molecular function	617	0.0
U6atac snRNA binding	Hs	molecular function	617	0.0
cytoplasmic ribonucleoprotein granule	Hs	cellular component	72.0	1.01e-12
telomeric DNA binding	Hs	molecular function	72.0	1.01e-12
histone binding	Hs	molecular function	617	0.0
identical protein binding	Hs	molecular function	72.0	1.01e-12
DNA topoisomerase binding	Hs	molecular function	72.0	1.01e-12
mRNA 5'-UTR binding	Hs	molecular function	72.0	1.01e-12
extracellular exosome	Hs	cellular component	72.0	1.01e-12
U4/U6 snRNP	Hs	cellular component	617	0.0
ubiquitin-specific protease binding	Hs	molecular function	617	0.0

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.22E-24
protein binding	SUPERFAMILY	molecular function	2.69E-50
RNA processing	SMART	biological process	0.008

Gene Card

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