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Gene Card

Best human hits

DMC1; RAD51; RAD51B

Species

H.roretzi

Unique Gene ID

Harore.g00015961

Gene Model ID

Harore.CG.MTP2014.S113.g15961

Location

S113:70467..71956

Transcript Models and Sequences

  Harore.CG.MTP2014.S113.g15961.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
DNA_recomb/repair_RecA-like PIRSF DNA recombination and repair protein, RecA-like
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Rad51_DMC1_RadA CDD Rad51/DMC1/RadA
DNA_repair_Rad51/TF_NusA_a-hlx SUPERFAMILY DNA repair Rad51/transcription factor NusA, alpha-helical
RecA_monomer-monomer_interface ProSiteProfiles DNA recombination and repair protein RecA, monomer-monomer interface
DNA_recomb/repair_Rad51_C Pfam DNA recombination and repair protein Rad51-like, C-terminal
RecA_ATP-bd ProSiteProfiles DNA recombination and repair protein RecA-like, ATP-binding domain
DNA_recomb/repair_Rad51 TIGRFAM DNA recombination/repair protein Rad51
AAA+_ATPase SMART AAA+ ATPase domain

GOSlim

36 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
DNA binding Orthology molecular function
double-stranded DNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
DNA metabolic process Orthology biological process
DNA repair Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
protein C-terminus binding Orthology molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
macromolecular complex Orthology cellular component
identical protein binding Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
protein homooligomerization Orthology biological process
catalytic activity Orthology molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
organelle organization Orthology biological process
intracellular organelle part Orthology cellular component
hydrolase activity Orthology molecular function
DNA replication Orthology biological process
reproductive process Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
nuclear body Orthology cellular component
enzyme binding Orthology molecular function
nuclear part Blast cellular component

GO (Orthology)

56 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
recombinase activity Hs molecular function
nucleotide binding Hs molecular function
nuclear chromosome Hs cellular component
four-way junction DNA binding Hs molecular function
telomere maintenance via recombination Hs biological process
double-strand break repair via homologous recombination Hs biological process
DNA recombinase assembly Hs biological process
DNA synthesis involved in DNA repair Hs biological process
strand displacement Hs biological process
nuclear chromosome, telomeric region Hs cellular component
chromatin Hs cellular component
nuclear chromatin Hs cellular component
condensed chromosome Hs cellular component
condensed nuclear chromosome Hs cellular component
lateral element Hs cellular component
DNA binding Hs molecular function
double-stranded DNA binding Hs molecular function
single-stranded DNA binding Hs molecular function
endodeoxyribonuclease activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
DNA metabolic process Hs biological process
DNA unwinding involved in DNA replication Hs biological process
DNA repair Hs biological process
DNA recombination Hs biological process
mitotic recombination Hs biological process
cellular response to DNA damage stimulus Hs biological process
reciprocal meiotic recombination Hs biological process
protein C-terminus binding Hs molecular function
DNA-dependent ATPase activity Hs molecular function
regulation of double-strand break repair via homologous recombination Hs biological process
telomere maintenance via telomere lengthening Hs biological process
PML body Hs cellular component
replication fork processing Hs biological process
macromolecular complex Hs cellular component
site of double-strand break Hs cellular component
interstrand cross-link repair Hs biological process
strand invasion Hs biological process
identical protein binding Hs molecular function
single-stranded DNA-dependent ATPase activity Hs molecular function
perinuclear region of cytoplasm Hs cellular component
protein homooligomerization Hs biological process
meiotic cell cycle Hs biological process
DNA polymerase binding Hs molecular function
chromosome organization involved in meiotic cell cycle Hs biological process
cellular response to ionizing radiation Hs biological process
mitotic recombination-dependent replication fork processing Hs biological process

GO (Blast)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
recombinase activity Hs molecular function 507 0.0
nucleotide binding Hs molecular function 507 0.0
nuclear chromosome Hs cellular component 507 0.0
four-way junction DNA binding Hs molecular function 507 0.0
chromosome, telomeric region Hs cellular component 340 1.58e-116
nuclear chromosome, telomeric region Hs cellular component 507 0.0
chromatin Hs cellular component 507 0.0
nuclear chromatin Hs cellular component 507 0.0
condensed chromosome Hs cellular component 507 0.0
condensed nuclear chromosome Hs cellular component 507 0.0
lateral element Hs cellular component 507 0.0
DNA binding Hs molecular function 507 0.0
double-stranded DNA binding Hs molecular function 507 0.0
single-stranded DNA binding Hs molecular function 507 0.0
endodeoxyribonuclease activity Hs molecular function 507 0.0
protein binding Hs molecular function 507 0.0
ATP binding Hs molecular function 507 0.0
nucleus Hs cellular component 507 0.0
nucleoplasm Hs cellular component 507 0.0
replication fork Hs cellular component 110 2.32e-27
chromosome Hs cellular component 340 1.58e-116
nucleolus Hs cellular component 507 0.0
cytoplasm Hs cellular component 507 0.0
mitochondrion Hs cellular component 507 0.0
mitochondrial matrix Hs cellular component 507 0.0
microtubule organizing center Hs cellular component 507 0.0
cytosol Hs cellular component 507 0.0
cytoskeleton Hs cellular component 507 0.0
protein C-terminus binding Hs molecular function 507 0.0
DNA-dependent ATPase activity Hs molecular function 507 0.0
membrane Hs cellular component 110 2.32e-27
integral component of membrane Hs cellular component 110 2.32e-27
PML body Hs cellular component 507 0.0
macromolecular complex Hs cellular component 507 0.0
Rad51B-Rad51C-Rad51D-XRCC2 complex Hs cellular component 110 2.32e-27
site of double-strand break Hs cellular component 507 0.0
identical protein binding Hs molecular function 507 0.0
single-stranded DNA-dependent ATPase activity Hs molecular function 507 0.0
perinuclear region of cytoplasm Hs cellular component 507 0.0
DNA polymerase binding Hs molecular function 507 0.0

GO (InterProScan)

11 results

GO Term Analysis Type e-value
recombinase activity TIGRFAM molecular function 1.7E-182
nucleotide binding SUPERFAMILY molecular function 1.08E-15
double-strand break repair via homologous recombination TIGRFAM biological process 1.7E-182
DNA binding CDD molecular function 5.44921E-148
double-stranded DNA binding TIGRFAM molecular function 1.7E-182
single-stranded DNA binding TIGRFAM molecular function 1.7E-182
ATP binding ProSiteProfiles molecular function 21.824
DNA metabolic process ProSiteProfiles biological process 21.824
DNA repair ProSiteProfiles biological process 50.01
DNA-dependent ATPase activity TIGRFAM molecular function 1.7E-182
mitotic recombination-dependent replication fork processing TIGRFAM biological process 1.7E-182

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