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GENE CARD

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Gene Card

Best human hits

POLR1C; POLR2C

Species

H.roretzi

Unique Gene ID

Harore.g00015962

Gene Model ID

Harore.CG.MTP2014.S110.g15962

Location

S110:138084..140234

Transcript Models and Sequences

  Harore.CG.MTP2014.S110.g15962.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
DNA-dir_RNA_pol_RpoA/D/Rpb3 Pfam DNA-directed RNA polymerase, RpoA/D/Rpb3-type
RNApol_insert_sf Gene3D DNA-directed RNA polymerase, insert domain superfamily
RBP11-like SUPERFAMILY RNA polymerase, RBP11-like subunit
RNApol_insert_sf SUPERFAMILY DNA-directed RNA polymerase, insert domain superfamily
RNAPI/II_AC40 CDD DNA-directed RNA polymerases I and III subunit AC40
DNA-dir_RNA_pol_30-40kDasu_CS ProSitePatterns DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
DNA-dir_RNA_pol_insert Pfam DNA-directed RNA polymerase, insert domain
RNAPI/II_AC40 PANTHER DNA-directed RNA polymerases I and III subunit AC40
DNA-dir_RNA_pol_RpoA/D/Rpb3 SMART DNA-directed RNA polymerase, RpoA/D/Rpb3-type

GOSlim

19 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Blast biological process
microtubule cytoskeleton Blast cellular component
protein dimerization activity Orthology molecular function
nuclear lumen Orthology cellular component
transferase activity, transferring phosphorus-containing groups Orthology molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
RNA biosynthetic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
nucleolus Orthology cellular component
positive regulation of gene expression Orthology biological process
nucleoplasm part Blast cellular component

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase I activity Hs molecular function
RNA polymerase III activity Hs molecular function
DNA binding Hs molecular function
DNA-directed 5'-3' RNA polymerase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA-directed RNA polymerase III complex Hs cellular component
DNA-directed RNA polymerase I complex Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
transcription from RNA polymerase I promoter Hs biological process
termination of RNA polymerase I transcription Hs biological process
transcription from RNA polymerase III promoter Hs biological process
positive regulation of type I interferon production Hs biological process
positive regulation of gene expression, epigenetic Hs biological process
protein dimerization activity Hs molecular function

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase I activity Hs molecular function 395 2.85e-138
RNA polymerase II activity Hs molecular function 90.5 4.83e-21
RNA polymerase III activity Hs molecular function 395 2.85e-138
DNA binding Hs molecular function 395 2.85e-138
DNA-directed 5'-3' RNA polymerase activity Hs molecular function 395 2.85e-138
protein binding Hs molecular function 395 2.85e-138
nucleus Hs cellular component 395 2.85e-138
nucleoplasm Hs cellular component 395 2.85e-138
DNA-directed RNA polymerase II, core complex Hs cellular component 90.5 4.83e-21
DNA-directed RNA polymerase III complex Hs cellular component 395 2.85e-138
DNA-directed RNA polymerase I complex Hs cellular component 395 2.85e-138
cytoplasm Hs cellular component 90.5 4.83e-21
cytosol Hs cellular component 395 2.85e-138
microtubule cytoskeleton Hs cellular component 90.5 4.83e-21
protein dimerization activity Hs molecular function 395 2.85e-138

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding ProSitePatterns molecular function
DNA-directed 5'-3' RNA polymerase activity SMART molecular function 1.1E-64
transcription, DNA-templated SMART biological process 1.1E-64
protein dimerization activity Pfam molecular function 1.5E-24

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