Aniseed - Gene card

Gene 'Haaura.CG.MTP2014.S6...'

Gene Card

Best human hits

LIN28B; YBX1; YBX2

Species

H.aurantium

Unique Gene ID

Haaura.g00006235

Gene Model ID

Haaura.CG.MTP2014.S682.g06235

Location

S682:29502..35262

Transcript Models and Sequences

Haaura.CG.MTP2014.S682.g06235.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
CSP_DNA-bd	Pfam	Cold-shock protein, DNA-binding
CSD	SMART	Cold shock domain
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
Cold-shock_CS	ProSitePatterns	Cold-shock conserved site
CSP_DNA-bd	PRINTS	Cold-shock protein, DNA-binding
CSP_DNA-bd	CDD	Cold-shock protein, DNA-binding

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	112	1.09e-27
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	112	1.09e-27
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	112	1.09e-27
fibrillar center	Hs	cellular component	140	4.61e-38
nucleic acid binding	Hs	molecular function	140	4.61e-38
DNA binding	Hs	molecular function	140	4.61e-38
chromatin binding	Hs	molecular function	112	1.09e-27
double-stranded DNA binding	Hs	molecular function	112	1.09e-27
single-stranded DNA binding	Hs	molecular function	112	1.09e-27
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	112	1.09e-27
RNA binding	Hs	molecular function	140	4.61e-38
protein binding	Hs	molecular function	112	1.09e-27
extracellular region	Hs	cellular component	112	1.09e-27
nucleus	Hs	cellular component	140	4.61e-38
nucleoplasm	Hs	cellular component	112	1.09e-27
U12-type spliceosomal complex	Hs	cellular component	112	1.09e-27
nucleolus	Hs	cellular component	68.9	2.62e-13
cytoplasm	Hs	cellular component	140	4.61e-38
cytosol	Hs	cellular component	112	1.09e-27
zinc ion binding	Hs	molecular function	68.9	2.62e-13
cytoplasmic stress granule	Hs	cellular component	112	1.09e-27
intracellular ribonucleoprotein complex	Hs	cellular component	112	1.09e-27
nuclear membrane	Hs	cellular component	112	1.09e-27
intracellular membrane-bounded organelle	Hs	cellular component	112	1.09e-27
metal ion binding	Hs	molecular function	68.9	2.62e-13
GTPase binding	Hs	molecular function	112	1.09e-27
extracellular exosome	Hs	cellular component	112	1.09e-27
CRD-mediated mRNA stability complex	Hs	cellular component	112	1.09e-27
histone pre-mRNA 3'end processing complex	Hs	cellular component	112	1.09e-27

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	1.9E-20
regulation of transcription, DNA-templated	Pfam	biological process	4.4E-23