Aniseed - Gene card

Gene Card

Best human hits

TSEN2; TSEN34

Species

H.aurantium

Unique Gene ID

Haaura.g00004148

Gene Model ID

Haaura.CG.MTP2014.S302.g04148

Location

S302:58041..59661

Transcript Models and Sequences

Haaura.CG.MTP2014.S302.g04148.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
tRNA_endonuc-like_dom_sf	Gene3D	tRNA endonuclease-like domain superfamily
tRNA_intron_Endonuc_N	Pfam	tRNA intron endonuclease, N-terminal
tRNA_splic	PANTHER	tRNA-splicing endonuclease
tRNA_intron_Endonuc_cat-like	Pfam	tRNA intron endonuclease, catalytic domain-like
tRNA_splic_SEN2	PIRSF	tRNA-splicing endonuclease, SEN2 subunit
tRNA_intron_Endo_cat-like_sf	SUPERFAMILY	tRNA intron endonuclease, catalytic domain-like superfamily
tRNA_splic	TIGRFAM	tRNA-splicing endonuclease

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
tRNA-intron endonuclease activity	Hs	molecular function
tRNA-intron endonuclease complex	Hs	cellular component
tRNA-type intron splice site recognition and cleavage	Hs	biological process
nucleic acid binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
centrosome	Hs	cellular component
cytosol	Hs	cellular component
tRNA splicing, via endonucleolytic cleavage and ligation	Hs	biological process
mRNA processing	Hs	biological process
tRNA processing	Hs	biological process
lyase activity	Hs	molecular function
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
tRNA-intron endonuclease activity	Hs	molecular function	154	1.01e-43
tRNA-intron endonuclease complex	Hs	cellular component	154	1.01e-43
nucleic acid binding	Hs	molecular function	154	1.01e-43
nuclease activity	Hs	molecular function	154	1.01e-43
endonuclease activity	Hs	molecular function	154	1.01e-43
protein binding	Hs	molecular function	154	1.01e-43
nucleus	Hs	cellular component	154	1.01e-43
nucleoplasm	Hs	cellular component	154	1.01e-43
nucleolus	Hs	cellular component	154	1.01e-43
centrosome	Hs	cellular component	154	1.01e-43
cytosol	Hs	cellular component	154	1.01e-43
lyase activity	Hs	molecular function	154	1.01e-43

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
tRNA-intron endonuclease activity	PANTHER	molecular function	1.2E-66
nucleic acid binding	Gene3D	molecular function	6.8E-28
nuclease activity	Gene3D	molecular function	6.8E-28
tRNA splicing, via endonucleolytic cleavage and ligation	PANTHER	biological process	1.2E-66