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Gene Card

Best human hits

SMG5; SMG6; SMG7

Species

H.aurantium

Unique Gene ID

Haaura.g00009260

Gene Model ID

Haaura.CG.MTP2014.S2089.g09260

Location

S2089:7102..14440

Transcript Models and Sequences

  Haaura.CG.MTP2014.S2089.g09260.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily
PIN_dom SMART PIN domain
DNA/RNA-bd_Est1-type Pfam DNA/RNA-binding domain, Est1-type
PIN_dom Pfam PIN domain
EST1 Pfam Telomerase activating protein Est1
PIN-like_dom_sf SUPERFAMILY PIN-like domain superfamily
TPR-like_helical_dom_sf Gene3D Tetratricopeptide-like helical domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
telomerase catalytic core complex Hs cellular component
chromosome, telomeric region Hs cellular component
DNA binding Hs molecular function
RNA binding Hs molecular function
nuclease activity Hs molecular function
endonuclease activity Hs molecular function
endoribonuclease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
chromosome Hs cellular component
telomerase holoenzyme complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
mRNA export from nucleus Hs biological process
hydrolase activity Hs molecular function
regulation of telomere maintenance via telomerase Hs biological process
exon-exon junction complex Hs cellular component
regulation of dephosphorylation Hs biological process
telomeric DNA binding Hs molecular function
ribonucleoprotein complex binding Hs molecular function
regulation of RNA stability Hs biological process
metal ion binding Hs molecular function
telomerase RNA binding Hs molecular function
DNA polymerase binding Hs molecular function
nucleic acid phosphodiester bond hydrolysis Hs biological process
RNA phosphodiester bond hydrolysis, endonucleolytic Hs biological process

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
telomerase catalytic core complex Hs cellular component 520 6.36e-162
chromosome, telomeric region Hs cellular component 520 6.36e-162
DNA binding Hs molecular function 520 6.36e-162
RNA binding Hs molecular function 520 6.36e-162
nuclease activity Hs molecular function 520 6.36e-162
endonuclease activity Hs molecular function 520 6.36e-162
endoribonuclease activity Hs molecular function 520 6.36e-162
ribonuclease activity Hs molecular function 105 1.06e-22
protein binding Hs molecular function 520 6.36e-162
nucleus Hs cellular component 520 6.36e-162
chromosome Hs cellular component 520 6.36e-162
telomerase holoenzyme complex Hs cellular component 520 6.36e-162
nucleolus Hs cellular component 520 6.36e-162
cytoplasm Hs cellular component 520 6.36e-162
cytosol Hs cellular component 520 6.36e-162
hydrolase activity Hs molecular function 520 6.36e-162
ubiquitin protein ligase binding Hs molecular function 82.4 1.19e-15
exon-exon junction complex Hs cellular component 520 6.36e-162
telomeric DNA binding Hs molecular function 520 6.36e-162
histone deacetylase binding Hs molecular function 82.4 1.19e-15
ribonucleoprotein complex binding Hs molecular function 520 6.36e-162
intermediate filament cytoskeleton Hs cellular component 105 1.06e-22
metal ion binding Hs molecular function 520 6.36e-162
protein phosphatase 2A binding Hs molecular function 105 1.06e-22
telomerase RNA binding Hs molecular function 520 6.36e-162
DNA polymerase binding Hs molecular function 520 6.36e-162

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 2.37E-73

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