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GENE CARD

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Gene Card

Best human hits

DDX1; DDX17; DDX5

Species

H.aurantium

Unique Gene ID

Haaura.g00007985

Gene Model ID

Haaura.CG.MTP2014.S1268.g07985

Location

S1268:1975..4198

Transcript Models and Sequences

  Haaura.CG.MTP2014.S1268.g07985.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Helicase_C Pfam Helicase, C-terminal
Helicase_C ProSiteProfiles Helicase, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
SPRY_dom SMART SPRY domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
SPRY_dom Pfam SPRY domain
B30.2/SPRY ProSiteProfiles B30.2/SPRY domain
Helicase_C CDD Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C SMART Helicase, C-terminal
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

42 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
spliceosomal complex assembly Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription cofactor activity Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
double-stranded RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
double-strand break repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
tRNA splicing, via endonucleolytic cleavage and ligation Hs biological process
mRNA processing Hs biological process
regulation of translational initiation Hs biological process
multicellular organism development Hs biological process
ATP-dependent helicase activity Hs molecular function
tRNA processing Hs biological process
poly(A) binding Hs molecular function
response to virus Hs biological process
cytoplasmic stress granule Hs cellular component
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
DNA/RNA helicase activity Hs molecular function
response to exogenous dsRNA Hs biological process
cleavage body Hs cellular component
tRNA-splicing ligase complex Hs cellular component
nucleic acid phosphodiester bond hydrolysis Hs biological process

GO (Blast)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 950 0.0
nucleic acid binding Hs molecular function 950 0.0
DNA binding Hs molecular function 950 0.0
chromatin binding Hs molecular function 950 0.0
transcription cofactor activity Hs molecular function 950 0.0
transcription coactivator activity Hs molecular function 144 7.33e-36
RNA binding Hs molecular function 950 0.0
RNA helicase activity Hs molecular function 950 0.0
double-stranded RNA binding Hs molecular function 950 0.0
mRNA 3'-UTR binding Hs molecular function 145 1.40e-36
ATP-dependent RNA helicase activity Hs molecular function 950 0.0
helicase activity Hs molecular function 950 0.0
nuclease activity Hs molecular function 950 0.0
exonuclease activity Hs molecular function 950 0.0
protein binding Hs molecular function 950 0.0
calmodulin binding Hs molecular function 145 1.40e-36
ATP binding Hs molecular function 950 0.0
nucleus Hs cellular component 950 0.0
nucleoplasm Hs cellular component 950 0.0
spliceosomal complex Hs cellular component 145 1.40e-36
nucleolus Hs cellular component 950 0.0
cytoplasm Hs cellular component 950 0.0
cytosol Hs cellular component 950 0.0
ATP-dependent helicase activity Hs molecular function 950 0.0
poly(A) binding Hs molecular function 950 0.0
RNA-dependent ATPase activity Hs molecular function 144 7.33e-36
cytoplasmic stress granule Hs cellular component 950 0.0
membrane Hs cellular component 950 0.0
nuclear speck Hs cellular component 144 7.33e-36
hydrolase activity Hs molecular function 950 0.0
enzyme binding Hs molecular function 145 1.40e-36
intracellular ribonucleoprotein complex Hs cellular component 950 0.0
DNA/RNA helicase activity Hs molecular function 950 0.0
MH2 domain binding Hs molecular function 145 1.40e-36
pre-mRNA binding Hs molecular function 145 1.40e-36
ribonucleoprotein complex binding Hs molecular function 145 1.40e-36
SMAD binding Hs molecular function 145 1.40e-36
calcium-dependent protein binding Hs molecular function 145 1.40e-36
androgen receptor binding Hs molecular function 145 1.40e-36
extracellular exosome Hs cellular component 145 1.40e-36
R-SMAD binding Hs molecular function 145 1.40e-36
primary miRNA binding Hs molecular function 145 1.40e-36
catalytic step 2 spliceosome Hs cellular component 145 1.40e-36
SMAD protein complex Hs cellular component 145 1.40e-36
cleavage body Hs cellular component 950 0.0
tRNA-splicing ligase complex Hs cellular component 950 0.0
promoter-specific chromatin binding Hs molecular function 145 1.40e-36

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 2.3E-62
protein binding SMART molecular function 1.0E-22

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