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GENE CARD

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Gene Card

Best human hits

HOXA3; HOXB3; HOXD3

Species

C.savignyi

Unique Gene ID

Cisavi.g00011565

Gene Model ID

Cisavi.CG.ENS81.R98.82798-90181

Location

R98:82797..90181

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Homeobox_dom Pfam Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_metazoa PRINTS Homeobox domain, metazoa
HTH_motif PRINTS Helix-turn-helix motif
Homeobox_dom CDD Homeobox domain
Homeobox_dom SMART Homeobox domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 139 1.37e-35
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 125 1.37e-30
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 139 1.37e-35
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 125 1.37e-30
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 139 1.37e-35
DNA binding Hs molecular function 139 1.37e-35
transcription factor activity, sequence-specific DNA binding Hs molecular function 139 1.37e-35
protein binding Hs molecular function 139 1.37e-35
nucleus Hs cellular component 139 1.37e-35
nucleoplasm Hs cellular component 139 1.37e-35
aggresome Hs cellular component 139 1.37e-35
nuclear body Hs cellular component 139 1.37e-35
sequence-specific DNA binding Hs molecular function 139 1.37e-35
HMG box domain binding Hs molecular function 132 7.67e-33

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 4.9E-28
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function