Aniseed - Gene card

Gene 'Cisavi.CG.ENS81.R9.2...'

Gene Card

Best human hits

POLR2I; POLR3K; ZNRD1

Species

C.savignyi

Unique Gene ID

Cisavi.g00011189

Gene Model ID

Cisavi.CG.ENS81.R9.2095035-2095843

Location

R9:2095034..2095843

Transcript Models and Sequences

Cisavi.CG.ENS81.R9.2095035-2095843.18256.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
DNA-dir_RNA_pol_M/15kDasu	SMART	DNA-directed RNA polymerase, M/15kDa subunit
Znf_TFIIS	ProSiteProfiles	Zinc finger, TFIIS-type
Znf_TFIIS	SMART	Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu	Pfam	DNA-directed RNA polymerase, M/15kDa subunit
Rpa12/Rpb9/Rpc10/TFS	PIRSF	DNA-directed RNA polymerase subunit/transcription factor S
Zn_ribbon_RPB9_C	CDD	Pol II subunit B9, C-terminal zinc ribbon
Znf_TFIIS	Pfam	Zinc finger, TFIIS-type
DNA-dir_RNA_pol-M_15_CS	ProSitePatterns	DNA-directed RNA polymerase M, 15kDa subunit, conserved site

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
DNA-directed RNA polymerase II, core complex	Hs	cellular component
nucleolus	Hs	cellular component
transcription-coupled nucleotide-excision repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
7-methylguanosine mRNA capping	Hs	biological process
mRNA cleavage	Hs	biological process
zinc ion binding	Hs	molecular function
fibroblast growth factor receptor signaling pathway	Hs	biological process
RNA metabolic process	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
snRNA transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
regulation of gene silencing by miRNA	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase I activity	Hs	molecular function	37.0	6.48e-04
RNA polymerase III activity	Hs	molecular function	54.7	9.45e-11
nucleic acid binding	Hs	molecular function	210	6.15e-72
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	210	6.15e-72
nucleus	Hs	cellular component	210	6.15e-72
nucleoplasm	Hs	cellular component	210	6.15e-72
DNA-directed RNA polymerase II, core complex	Hs	cellular component	210	6.15e-72
DNA-directed RNA polymerase III complex	Hs	cellular component	54.7	9.45e-11
nucleolus	Hs	cellular component	210	6.15e-72
DNA-directed RNA polymerase I complex	Hs	cellular component	37.0	6.48e-04
cytosol	Hs	cellular component	54.7	9.45e-11
zinc ion binding	Hs	molecular function	210	6.15e-72
metal ion binding	Hs	molecular function	210	6.15e-72

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	9.9E-13
transcription, DNA-templated	PIRSF	biological process	1.1E-20
mRNA cleavage	CDD	biological process	1.10279E-27
zinc ion binding	Pfam	molecular function	9.9E-13