Gene Card
Best human hits
LSM10; LSM2; SNRPD1
Species
Unique Gene ID
Cisavi.g00010709
Gene Model ID
Cisavi.CG.ENS81.R77.1550527-1552814
Location
R77:1550526..1552814
Transcript Models and Sequences
n/a
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| LSm4/Sm_D1/D3 | PANTHER | Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 |
| Sm_D1 | CDD | Small nuclear ribonucleoprotein D1 |
| LSM_dom_euk/arc | SMART | LSM domain, eukaryotic/archaea-type |
| LSM_dom_euk/arc | Pfam | LSM domain, eukaryotic/archaea-type |
| LSM_dom_sf | SUPERFAMILY | LSM domain superfamily |
| GO Term | Annotation Origin | Type |
|---|
GO (Orthology)
31 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| commitment complex | Hs | cellular component |
| spliceosomal complex assembly | Hs | biological process |
| spliceosomal snRNP assembly | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U5 snRNP | Hs | cellular component |
| U1 snRNP | Hs | cellular component |
| U2 snRNP | Hs | cellular component |
| U4 snRNP | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| intracellular ribonucleoprotein complex | Hs | cellular component |
| small nuclear ribonucleoprotein complex | Hs | cellular component |
| methylosome | Hs | cellular component |
| pICln-Sm protein complex | Hs | cellular component |
| SMN-Sm protein complex | Hs | cellular component |
| nuclear import | Hs | biological process |
| U2-type catalytic step 2 spliceosome | Hs | cellular component |
| prespliceosome | Hs | cellular component |
| precatalytic spliceosome | Hs | cellular component |
| catalytic step 2 spliceosome | Hs | cellular component |
| spliceosomal tri-snRNP complex | Hs | cellular component |
| U1 snRNP binding | Hs | molecular function |
GO (Blast)
35 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| commitment complex | Hs | cellular component | 159 | 8.53e-52 |
| P-body | Hs | cellular component | 39.7 | 3.78e-05 |
| RNA binding | Hs | molecular function | 159 | 8.53e-52 |
| protein binding | Hs | molecular function | 159 | 8.53e-52 |
| nucleus | Hs | cellular component | 159 | 8.53e-52 |
| nucleoplasm | Hs | cellular component | 159 | 8.53e-52 |
| spliceosomal complex | Hs | cellular component | 159 | 8.53e-52 |
| U5 snRNP | Hs | cellular component | 159 | 8.53e-52 |
| U7 snRNP | Hs | cellular component | 46.6 | 1.33e-07 |
| U1 snRNP | Hs | cellular component | 159 | 8.53e-52 |
| U2 snRNP | Hs | cellular component | 159 | 8.53e-52 |
| U4 snRNP | Hs | cellular component | 159 | 8.53e-52 |
| U6 snRNP | Hs | cellular component | 39.7 | 3.78e-05 |
| U12-type spliceosomal complex | Hs | cellular component | 159 | 8.53e-52 |
| cytoplasm | Hs | cellular component | 159 | 8.53e-52 |
| cytosol | Hs | cellular component | 159 | 8.53e-52 |
| Cajal body | Hs | cellular component | 46.6 | 1.33e-07 |
| nuclear body | Hs | cellular component | 46.6 | 1.33e-07 |
| U6 snRNA binding | Hs | molecular function | 39.7 | 3.78e-05 |
| Ral GTPase binding | Hs | molecular function | 39.7 | 3.78e-05 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 159 | 8.53e-52 |
| small nuclear ribonucleoprotein complex | Hs | cellular component | 159 | 8.53e-52 |
| methylosome | Hs | cellular component | 159 | 8.53e-52 |
| pICln-Sm protein complex | Hs | cellular component | 159 | 8.53e-52 |
| SMN-Sm protein complex | Hs | cellular component | 159 | 8.53e-52 |
| U4/U6 x U5 tri-snRNP complex | Hs | cellular component | 39.7 | 3.78e-05 |
| U2-type catalytic step 2 spliceosome | Hs | cellular component | 159 | 8.53e-52 |
| prespliceosome | Hs | cellular component | 159 | 8.53e-52 |
| precatalytic spliceosome | Hs | cellular component | 159 | 8.53e-52 |
| catalytic step 2 spliceosome | Hs | cellular component | 159 | 8.53e-52 |
| histone pre-mRNA DCP binding | Hs | molecular function | 46.6 | 1.33e-07 |
| U7 snRNA binding | Hs | molecular function | 46.6 | 1.33e-07 |
| spliceosomal tri-snRNP complex | Hs | cellular component | 159 | 8.53e-52 |
| U1 snRNP binding | Hs | molecular function | 159 | 8.53e-52 |
| Lsm1-7-Pat1 complex | Hs | cellular component | 39.7 | 3.78e-05 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| spliceosomal snRNP assembly | CDD | biological process | 2.01075E-57 |
| RNA processing | PANTHER | biological process | 1.2E-48 |
