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GENE CARD

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Gene Card

Best human hits

PRPF40B; TCERG1; WAC

Species

C.savignyi

Unique Gene ID

Cisavi.g00009498

Gene Model ID

Cisavi.CG.ENS81.R58.3084968-3092698

Location

R58:3084967..3092698

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
WW_dom SMART WW domain
WW_dom Pfam WW domain
WW_dom ProSitePatterns WW domain
WW_dom CDD WW domain
WW_dom_sf SUPERFAMILY WW domain superfamily
WW_dom ProSiteProfiles WW domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II core binding Hs molecular function 61.6 7.65e-11
RNA polymerase II repressing transcription factor binding Hs molecular function 38.5 0.004
RNA polymerase II transcription corepressor activity Hs molecular function 38.5 0.004
chromatin binding Hs molecular function 61.6 7.65e-11
transcription coactivator activity Hs molecular function 38.5 0.004
RNA binding Hs molecular function 40.0 0.001
protein binding Hs molecular function 61.6 7.65e-11
nucleus Hs cellular component 61.6 7.65e-11
nucleoplasm Hs cellular component 61.6 7.65e-11
spliceosomal complex Hs cellular component 61.6 7.65e-11
U1 snRNP Hs cellular component 40.0 0.001
nuclear speck Hs cellular component 61.6 7.65e-11
identical protein binding Hs molecular function 38.5 0.004
proline-rich region binding Hs molecular function 38.5 0.004
U2-type prespliceosome Hs cellular component 40.0 0.001

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.93E-9