Aniseed - Gene card

Gene Card

Best human hits

GAR1

Species

C.savignyi

Unique Gene ID

Cisavi.g00007767

Gene Model ID

Cisavi.CG.ENS81.R44.819791-821041

Location

R44:819790..821041

Transcript Models and Sequences

Cisavi.CG.ENS81.R44.819791-821041.10969.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
H/ACA_rnp_Gar1	PANTHER	H/ACA ribonucleoprotein complex, subunit Gar1
Transl_B-barrel_sf	SUPERFAMILY	Translation protein, beta-barrel domain superfamily
H/ACA_rnp_Gar1/Naf1	Pfam	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
H/ACA_rnp_Gar1	ProDom	H/ACA ribonucleoprotein complex, subunit Gar1
Gar1/Naf1_Cbf5-bd_sf	Gene3D	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
snoRNA guided rRNA pseudouridine synthesis	Hs	biological process
nuclear chromosome, telomeric region	Hs	cellular component
pseudouridine synthesis	Hs	biological process
fibrillar center	Hs	cellular component
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
telomerase holoenzyme complex	Hs	cellular component
nucleolus	Hs	cellular component
rRNA processing	Hs	biological process
telomere maintenance via telomerase	Hs	biological process
Cajal body	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
rRNA pseudouridine synthesis	Hs	biological process
box H/ACA snoRNP complex	Hs	cellular component
box H/ACA snoRNA binding	Hs	molecular function
ribosome biogenesis	Hs	biological process
telomerase RNA binding	Hs	molecular function
box H/ACA scaRNP complex	Hs	cellular component
box H/ACA telomerase RNP complex	Hs	cellular component

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromosome, telomeric region	Hs	cellular component	149	2.66e-45
fibrillar center	Hs	cellular component	149	2.66e-45
RNA binding	Hs	molecular function	149	2.66e-45
protein binding	Hs	molecular function	149	2.66e-45
nucleus	Hs	cellular component	149	2.66e-45
nucleoplasm	Hs	cellular component	149	2.66e-45
telomerase holoenzyme complex	Hs	cellular component	149	2.66e-45
nucleolus	Hs	cellular component	149	2.66e-45
Cajal body	Hs	cellular component	149	2.66e-45
intracellular ribonucleoprotein complex	Hs	cellular component	149	2.66e-45
box H/ACA snoRNP complex	Hs	cellular component	149	2.66e-45
box H/ACA snoRNA binding	Hs	molecular function	149	2.66e-45
telomerase RNA binding	Hs	molecular function	149	2.66e-45
box H/ACA scaRNP complex	Hs	cellular component	149	2.66e-45
box H/ACA telomerase RNP complex	Hs	cellular component	149	2.66e-45

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
pseudouridine synthesis	PANTHER	biological process	3.1E-61
box H/ACA snoRNP complex	PANTHER	cellular component	3.1E-61
ribosome biogenesis	PANTHER	biological process	3.1E-61