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GENE CARD

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Gene Card

Best human hits

IGHMBP2; SETX; UPF1

Species

C.savignyi

Unique Gene ID

Cisavi.g00005479

Gene Model ID

Cisavi.CG.ENS81.R26.724933-737561

Location

R26:724932..737561

Transcript Models and Sequences

  Cisavi.CG.ENS81.R26.724933-737561.10711.t
Cisavi.CG.ENS81.R26.724933-737561.10712.t

External Database Gene Card

External database links

No result

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WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Znf_AN1 ProSiteProfiles Zinc finger, AN1-type
SMUBP-2/Hcs1-like TIGRFAM Helicase SMUBP-2/Hcs1-like
R3H_dom ProSiteProfiles R3H domain
AN1-like_Znf SUPERFAMILY AN1-like Zinc finger
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
R3H_dom Pfam R3H domain
R3H_dom_sf Gene3D R3H domain superfamily
AAA+_ATPase SMART AAA+ ATPase domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Znf_AN1 SMART Zinc finger, AN1-type
Znf_AN1 Pfam Zinc finger, AN1-type
R3H_dom_sf SUPERFAMILY R3H domain superfamily
AN1-like_Znf Gene3D AN1-like Zinc finger

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
tRNA binding Hs molecular function
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
DNA helicase activity Hs molecular function
single-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
DNA replication Hs biological process
DNA repair Hs biological process
DNA recombination Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
translation Hs biological process
DNA-dependent ATPase activity Hs molecular function
transcription factor binding Hs molecular function
RNA-dependent ATPase activity Hs molecular function
zinc ion binding Hs molecular function
membrane Hs cellular component
hydrolase activity Hs molecular function
axon Hs cellular component
growth cone Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
ATP-dependent 5'-3' RNA helicase activity Hs molecular function
cell projection Hs cellular component
ribosome binding Hs molecular function
ATP-dependent 5'-3' DNA helicase activity Hs molecular function
metal ion binding Hs molecular function
protein homooligomerization Hs biological process

GO (Blast)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
tRNA binding Hs molecular function 834 0.0
nucleotide binding Hs molecular function 834 0.0
nuclear chromosome Hs cellular component 166 2.02e-41
chromosome, telomeric region Hs cellular component 166 2.02e-41
nuclear chromosome, telomeric region Hs cellular component 198 5.05e-52
chromatin Hs cellular component 198 5.05e-52
P-body Hs cellular component 198 5.05e-52
transcription termination site sequence-specific DNA binding Hs molecular function 166 2.02e-41
nucleic acid binding Hs molecular function 834 0.0
DNA binding Hs molecular function 834 0.0
DNA helicase activity Hs molecular function 834 0.0
chromatin binding Hs molecular function 198 5.05e-52
single-stranded DNA binding Hs molecular function 834 0.0
RNA binding Hs molecular function 834 0.0
ATP-dependent RNA helicase activity Hs molecular function 198 5.05e-52
helicase activity Hs molecular function 834 0.0
protein binding Hs molecular function 834 0.0
ATP binding Hs molecular function 834 0.0
nucleus Hs cellular component 834 0.0
nucleoplasm Hs cellular component 198 5.05e-52
chromosome Hs cellular component 166 2.02e-41
nucleolus Hs cellular component 166 2.02e-41
cytoplasm Hs cellular component 834 0.0
cytosol Hs cellular component 198 5.05e-52
DNA-dependent ATPase activity Hs molecular function 834 0.0
transcription factor binding Hs molecular function 834 0.0
RNA-dependent ATPase activity Hs molecular function 834 0.0
zinc ion binding Hs molecular function 834 0.0
membrane Hs cellular component 834 0.0
nuclear body Hs cellular component 166 2.02e-41
hydrolase activity Hs molecular function 834 0.0
axon Hs cellular component 834 0.0
growth cone Hs cellular component 834 0.0
intracellular ribonucleoprotein complex Hs cellular component 834 0.0
ATP-dependent 5'-3' RNA helicase activity Hs molecular function 834 0.0
exon-exon junction complex Hs cellular component 198 5.05e-52
telomeric DNA binding Hs molecular function 198 5.05e-52
identical protein binding Hs molecular function 166 2.02e-41
cell projection Hs cellular component 834 0.0
ribosome binding Hs molecular function 834 0.0
ATP-dependent 5'-3' DNA helicase activity Hs molecular function 834 0.0
supraspliceosomal complex Hs cellular component 198 5.05e-52
intercellular bridge Hs cellular component 166 2.02e-41
metal ion binding Hs molecular function 834 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding Gene3D molecular function 6.9E-13
DNA binding TIGRFAM molecular function 1.3E-189
ATP binding TIGRFAM molecular function 1.3E-189
zinc ion binding Pfam molecular function 4.6E-6

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