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Gene Card

Best human hits

LHX1; LHX5

Species

C.savignyi

Unique Gene ID

Cisavi.g00004388

Gene Model ID

Cisavi.CG.ENS81.R21.1343975-1351473

Location

R21:1343974..1351473

Transcript Models and Sequences

  Cisavi.CG.ENS81.R21.1343975-1351473.08378.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Znf_LIM ProSiteProfiles Zinc finger, LIM-type
Homeobox_dom ProSiteProfiles Homeobox domain
Znf_LIM Pfam Zinc finger, LIM-type
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom Pfam Homeobox domain
Znf_LIM SMART Zinc finger, LIM-type
Homeobox_dom CDD Homeobox domain
Homeobox_dom SMART Homeobox domain
Znf_LIM ProSitePatterns Zinc finger, LIM-type
Homeobox_CS ProSitePatterns Homeobox, conserved site

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

70 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
urogenital system development Hs biological process
ureteric bud development Hs biological process
branching involved in ureteric bud morphogenesis Hs biological process
gastrulation with mouth forming second Hs biological process
ectoderm formation Hs biological process
endoderm formation Hs biological process
kidney development Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
cell-cell signaling Hs biological process
multicellular organism development Hs biological process
pattern specification process Hs biological process
nervous system development Hs biological process
motor neuron axon guidance Hs biological process
anatomical structure morphogenesis Hs biological process
post-embryonic development Hs biological process
embryonic pattern specification Hs biological process
animal organ morphogenesis Hs biological process
anterior/posterior axis specification Hs biological process
anterior/posterior pattern specification Hs biological process
dorsal/ventral pattern formation Hs biological process
regulation of gene expression Hs biological process
retina layer formation Hs biological process
spinal cord development Hs biological process
ventral spinal cord development Hs biological process
spinal cord association neuron differentiation Hs biological process
telencephalon development Hs biological process
cerebellum development Hs biological process
cerebellar Purkinje cell differentiation Hs biological process
cell proliferation in forebrain Hs biological process
forebrain regionalization Hs biological process
forebrain neuron differentiation Hs biological process
cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation Hs biological process
cell differentiation Hs biological process
somite rostral/caudal axis specification Hs biological process
macromolecular complex Hs cellular component
positive regulation of embryonic development Hs biological process
regulation of cell proliferation Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
metal ion binding Hs molecular function
anatomical structure formation involved in morphogenesis Hs biological process
embryonic viscerocranium morphogenesis Hs biological process
pronephros development Hs biological process
retina development in camera-type eye Hs biological process
embryonic retina morphogenesis in camera-type eye Hs biological process
uterus development Hs biological process
head development Hs biological process
epithelium development Hs biological process
paramesonephric duct development Hs biological process
renal system development Hs biological process
comma-shaped body morphogenesis Hs biological process
S-shaped body morphogenesis Hs biological process
renal vesicle morphogenesis Hs biological process
nephric duct morphogenesis Hs biological process
primitive streak formation Hs biological process
positive regulation of branching involved in ureteric bud morphogenesis Hs biological process
lateral motor column neuron migration Hs biological process
positive regulation of gastrulation Hs biological process
positive regulation of anterior head development Hs biological process
positive regulation of nephron tubule epithelial cell differentiation Hs biological process

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 230 7.47e-72
DNA binding Hs molecular function 230 7.47e-72
transcription factor activity, sequence-specific DNA binding Hs molecular function 224 1.87e-69
transcription corepressor activity Hs molecular function 224 1.87e-69
intracellular Hs cellular component 224 1.87e-69
nucleus Hs cellular component 230 7.47e-72
macromolecular complex Hs cellular component 224 1.87e-69
sequence-specific DNA binding Hs molecular function 230 7.47e-72
metal ion binding Hs molecular function 230 7.47e-72

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.4E-21
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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